A Beta project LevSeq vis
Web app for combining and visualising LevSeq sequence function data.
Test it out with the data in the data folder. Use the columns in the screenshot below.
Once you have your figures you can download the csv results by hovering on any of the tables.
Upload with data
Using the visualization_partial.csv file as the variant file and the 300-1 in the ep1 folder.
Tables for download
We join the data based on user selected columns (in this case cis and trans) from a LC-MS run.
Overview of alignment count
The alignment count is how many reads assigned to each type were assigned to each well.
Scatterplot of multiple features
This shows the fitness values of two plotted against eachother, if only one feature is provided we will plot it against the alignment count.
Please provide feedback
Leave a feature request in the issues or on LevSeq .
Cite
Cite our paper please if you use it.
Developers
streamlit run app.py
References
Streamlit app based on: https://share.streamlit.io/streamlit/example-app-csv-wrangler/ Thanks to you who made it <3
1 maintainer
Metadata
1 maintainer
Release files for levseq-vis 1.2.6
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| levseq_vis-1.2.6.tar.gz | 15.7 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| levseq_vis-1.2.6-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 44.2 kB
Release files / levseq_vis-1.2.6.tar.gz
| Download URL | levseq_vis-1.2.6.tar.gz |
|---|---|
| Size | 15.7 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.0.1 CPython/3.12.7
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Release files / levseq_vis-1.2.6-py3-none-any.whl
| Download URL | levseq_vis-1.2.6-py3-none-any.whl |
|---|---|
| Size | 28.6 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.0.1 CPython/3.12.7
|
