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A Python library for working with NeuroML descriptions of neuronal models

Project description

## Introduction

This package provides Python libNeuroML, for working with neuronal models specified in NeuroML 2 (http://neuroml.org/neuromlv2).

For more about libNeuroML see:

Michael Vella, Robert C. Cannon, Sharon Crook, Andrew P. Davison, Gautham Ganapathy, Hugh P. C. Robinson, R. Angus Silver and Padraig Gleeson, libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience [Frontiers in Neuroinformatics 2014](http://journal.frontiersin.org/Journal/10.3389/fninf.2014.00038/abstract), doi: 10.3389/fninf.2014.00038

_**PLEASE CITE THE PAPER ABOVE IF YOU USE libNeuroML!**_

Documentation is available at http://readthedocs.org/docs/libneuroml/en/latest/

For installation instructions, see http://readthedocs.org/docs/libneuroml/en/latest/install.html

## Process

Most of the work happens in the [development branch](https://github.com/NeuralEnsemble/libNeuroML/tree/development). That branch is kept up to date with the development branches for [NeuroML 2](https://github.com/NeuroML/NeuroML2/tree/development) and related libraries. See https://neuroml.org/getneuroml for an overview of the various NeuroML libraries.

Note that [pyNeuroML](https://github.com/NeuroML/pyNeuroML) is also in active development with other NeuroML2 utilities besides parsing/modifying/writing which this package concentrates on.

## Travis integration

libNeuroML is integrated with the the [Travis Continuous Integration service](http://travis-ci.org/).

[![Build Status](https://api.travis-ci.org/NeuralEnsemble/libNeuroML.png)](https://travis-ci.org/NeuralEnsemble/libNeuroML)

## Changelog

### version 0.2.18
  • Updated to use the final stable Schema for NeuroML v2beta4
  • Tested with Python 3
### version 0.2.4
  • Updated to use the Schema for NeuroML v2beta4
### version 0.2.2
  • Updated to use the Schema for NeuroML v2beta3
  • Ensures numpy & pytables are only required when using non-XML loaders/writers
### version 0.2.0
  • Updated to use the Schema for NeuroML v2beta2
### version 0.1.9
  • Minor release: Update to latest schema

### version 0.1.8

  • Several Bug fixes and small enhamcements
  • Support for latest NeuroML schema (see change outline)
  • JSON serialization
  • MongoDB backend
  • HDF5 serialization
  • Improved installation process
  • All usage examples are now run on the Travis-CI continuous integration server to confirm that that they do not error.
  • Schema validation utility
  • Improved documentation and documentation new look
copyright:Copyright 2017 by the libNeuroML team, see AUTHORS.
license:Modified BSD License, see LICENSE for details.

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