libiap 0.2.0

Python SDK/Library for IAP

libiap

Python SDK/Library for IAP -- https://umccr-illumina.github.io/libiap/

• OpenAPI
• PyDoc
• Test Coverage

TL;DR

• Install through pip like so:

pip install libiap

• Export IAP base URL and auth token:

export IAP_BASE_URL=<baseUrl>
export IAP_AUTH_TOKEN=<tok>

• Somewhere in your Python code:

from libiap import libgds

for file in libgds.list_files(volume_name='my-gds-volume-name'):
    print(file)

• Using OpenAPI:

import os
from libiap.openapi import libwes
from libiap.openapi.libwes import WorkflowList, WorkflowCompact

iap_auth_token = os.getenv("IAP_AUTH_TOKEN")
iap_base_url = os.getenv("IAP_BASE_URL")

configuration = libwes.Configuration(
    host=iap_base_url,
    api_key={
        'Authorization': iap_auth_token
    },
    api_key_prefix={
        'Authorization': "Bearer"
    },
)

with libwes.ApiClient(configuration) as api_client:

    wfl_api: libwes.WorkflowsApi = libwes.WorkflowsApi(api_client)
    try:
        page_token = None
        while True:
            wfl_list: WorkflowList = wfl_api.list_workflows(page_size=100, page_token=page_token)
            # print(wfl_list)
            for item in wfl_list.items:
                wfl: WorkflowCompact = item
                print(wfl.id)
                print(wfl.name)
            page_token = wfl_list.next_page_token
            if not wfl_list.next_page_token:
                break
    except libwes.ApiException as e:
        print(e)

• More examples/tutorials available at User Guide

Development

• Pilot run or Integration Test:

export IAP_BASE_URL=<baseUrl>
export IAP_AUTH_TOKEN=<tok>
python pilot.py

• See Developer Guide for more notes

License

MIT License and DISCLAIMER