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PDE-G-CNN package for PyTorch

Project description

LieTorch

This project provides a python package that expands the functionality of the PyTorch framework with PDE-based group equivariant CNN operators [1].

The name

The name LieTorch is a reference to the Norwegian mathematician Sophus Lie, whose contributions to geometry are extensively used in this project. The name is pronounced /li:/ (as in Lee) and not /ˈlī/ (as in lie).

Installation

The version of LieTorch you install must match the installed PyTorch version per the following table.

PyTorch version LieTorch version
2.6+cu126 0.8
2.5 0.7
2.0 0.6
1.13 0.5
1.12 0.4

The following commands will install PyTorch and the lietorch package in a fresh virtual environment. Note that installing PyTorch via the Anaconda packages is deprecated since 2.6.

  conda create -n <environment name>
  conda activate <environment name>

  # install python and pip
  conda install python=3.13 pip

  # install PyTorch with pip
  pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cu126

  # and install lietorch with pip
  pip install lietorch

Make sure your Nvidia drivers are up to date!

Neural network modules

Modules are grouped according to the manifold they operate on. Most modules have a functional equivalant in the lietorch.nn.functional namespace.

Euclidean Space ℝ²

Basic operators:

Module Functional C++/CUDA backend
MorphologicalConvolutionR2 morphological_convolution_r2
FractionalDilationR2 fractional_dilation_r2
FractionalErosionR2 fractional_erosion_r2
ConvectionR2 convection_r2
DiffusionR2 diffusion_r2
LinearR2 linear_r2

Position and Orientation Space 𝕄₂

Basic operators:

Module Functional C++/CUDA backend
LiftM2Cartesian lift_m2_cartesian -
ReflectionPadM2 reflection_pad_m2 -
ConvM2Cartesian conv_m2_cartesian -
MaxProjectM2 max_project_m2 -
AnisotropicDilatedProjectM2 anisotropic_dilated_project_m2
MorphologicalConvolutionM2 morphological_convolution_m2
LinearConvolutionM2 linear_convolution_m2
ConvectionM2 convection_m2
DiffusionM2 diffusion_m2
FractionalDilationM2 fractional_dilation_m2
FractionalErosionM2 fractional_erosion_m2
LinearM2 linear_m2

High-level modules for implementing PDE-based networks:

Module Description/PDE
ConvectionDilationPdeM2 $u_t=-\mathbf{c}u + \lVert \nabla u \rVert^{2 \alpha}_{\mathcal{G}}$
ConvectionErosionPdeM2 $u_t=-\mathbf{c}u - \lVert \nabla u \rVert^{2 \alpha}_{\mathcal{G}}$
CDEPdeLayerM2 $u_t=-\mathbf{c}u + \lVert \nabla u \rVert^{2 \alpha}_{\mathcal{G}_1} - \lVert \nabla u \rVert^{2 \alpha}_{\mathcal{G}_2}$
with batch normalization and linear combinations

Loss functions

Additional loss functions.

Module Functional Description
lietorch.nn.loss.DiceLoss lietorch.nn.functional.dice_loss Binary DICE loss

Generic

The modules in the generic category do not fit into any previous category and include operators that serve as C++/CUDA implementation examples.

Module Functional C++/CUDA backend
GrayscaleDilation2D grayscale_dilation_2d
GrayscaleErosion2D grayscale_erosion_2d

Extra Dependencies

The included experiments additionally depend on the following packages.

  • scikit-learn
  • tqdm
  • numpy
  • sty
  • mlflow
  • libtiff

Structure

  • /lietorch contains the main python package.
  • /experiments contains various experiments, including those used in publications.
  • /tests contains unit tests.
  • /backend contains the source code of the C++/CUDA backend,
  • /assets various files used in tests and documentation.

Cite

If you use this code in your own work please cite our paper:

[1] Smets, B.M.N., Portegies, J., Bekkers, E.J. et al. PDE-Based Group Equivariant Convolutional Neural Networks. J Math Imaging Vis (2022). https://doi.org/10.1007/s10851-022-01114-x

@article{smets2022pde,
  title={PDE-based Group Equivariant Convolutional Neural Networks},
  author={Smets, Bart and Portegies, Jim and Bekkers, Erik and Duits, Remco},
  journal={Journal of Mathematical Imaging and Vision},
  year={2022},
  doi={10.1007/s10851-022-01114-x},
  url={https://doi.org/10.1007/s10851-022-01114-x}
}

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