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Linear mixed model bootstrapping

Project description

LiMMBo

LiMMBo enables multivariate analysis of high-dimensional phenotypes based on linear mixed models with bootstrapping (LiMMBo). LiMMBo is available as an open source Python module. It builds on and can be used in combination with LIMIX, a flexible and efficient linear mixed model library with interfaces to Python.

A description of the public interface can be found here

Install

LiMMBo is available on the Python Package Index. LiMMBo is dependent on Limix LIMIX, however the latest Limix release does not include multi-variate models (seeissue 7). While waiting for the updated Limix release please install as follows:

Install LIMIX with multi-variate support (v1.0.18):

pip3 install "limix<2"

After successful installation of LIMIX, simply install LiMMBo via

pip3 install limmbo

Recently, an R wrapper package for limmbo was created - this independent project can be found here.

Problems

If you encounter any issue, please, submit them .

License

This project is licensed under the Apache License (Version 2.0, January 2004) - see the LICENSE file for details

Project details


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Files for limmbo, version 0.1.5
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