Skip to main content

A template project with packages

Project description

A minimalistic parser for sequence alignments (fasta or stockholm formats).

The parser returns an iterator over the alignment records as (identifier, sequence) tuples.

Usage example:

>>> import lilbio
>>> parsed_records = lilbio.parse('alignment.fa', 'fasta')

Built over modified low-level parsers from Biopython (SimpleFastaParser function and StockholmIterator class).

Changes

0.8 (2019-05-27)

  • Python3 only (>= 3.4)

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

little-bio-parser-0.8.1.tar.gz (6.8 kB view details)

Uploaded Source

Built Distribution

little_bio_parser-0.8.1-py3-none-any.whl (8.2 kB view details)

Uploaded Python 3

File details

Details for the file little-bio-parser-0.8.1.tar.gz.

File metadata

  • Download URL: little-bio-parser-0.8.1.tar.gz
  • Upload date:
  • Size: 6.8 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.13.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.0.1 requests-toolbelt/0.9.1 tqdm/4.32.1 CPython/3.6.3

File hashes

Hashes for little-bio-parser-0.8.1.tar.gz
Algorithm Hash digest
SHA256 0e3dd46711ae2216d70e3b7717aba9a72619732121925c8643e3eb76e97d4430
MD5 e3ab750ef374dc7fcfbd721a048cea1c
BLAKE2b-256 0055fef678367a268e10e464e4bd3ce3f7cb1c9d09e84eb24f3600351197e1fb

See more details on using hashes here.

File details

Details for the file little_bio_parser-0.8.1-py3-none-any.whl.

File metadata

  • Download URL: little_bio_parser-0.8.1-py3-none-any.whl
  • Upload date:
  • Size: 8.2 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.13.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.0.1 requests-toolbelt/0.9.1 tqdm/4.32.1 CPython/3.6.3

File hashes

Hashes for little_bio_parser-0.8.1-py3-none-any.whl
Algorithm Hash digest
SHA256 2b92680224b0b7bb1c2ac51f94e682077d6bdd41b6dd3c33be030a3bec3343a2
MD5 5206342c72aee903c1ea5022bf329cc2
BLAKE2b-256 f4411a7813e3d52a25e4fe1fc34ba18fc8eaaf8944ccecfec11056e3134e925a

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page