living-tree-toolkit
An efficient toolkit for processing taxonomic trees (abundance calculations, reads count statistics, etc.) and generating taxonomic trees using lineages data retrieved from the NCBI taxonomy database.
Use treelib API to achieve rapid construction of complex trees and ete3 toolkit API to retrieve data from NCBI taxonomy database.
This project is a sub-project of the ONN4MDM project, if you use it for academic purposes, please cite us.
Update
- 2020/03/27:
- start finalizing project framework and release initial version.
- 2020/04/14:
- Api update
update_valueandget_matrix - New method
get_top_down_ids,get_bottom_up_ids,get_ids_by_levelandget_paths_to_level - Execution efficiency are improved significantly
- Api update
Documentation
For Installation, examples and API references, see https://living-tree-toolkit.readthedocs.io/en/latest/
Maintainer
| Name | Organization | |
|---|---|---|
| Hui Chong | huichong.me@gmail.com | Research Assistant, Institute of Science and Technology for Brain-inspired Intelligence, Fudan University |
1 maintainer
Metadata
1 maintainer
Release files for living-tree 0.0.6
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| living-tree-0.0.6.tar.gz | 368.0 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| living_tree-0.0.6-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 377.0 kB
Release files / living-tree-0.0.6.tar.gz
| Download URL | living-tree-0.0.6.tar.gz |
|---|---|
| Size | 368.0 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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twine/3.7.1 importlib_metadata/4.10.0 pkginfo/1.8.2 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.8.12
|
Release files / living_tree-0.0.6-py3-none-any.whl
| Download URL | living_tree-0.0.6-py3-none-any.whl |
|---|---|
| Size | 9.0 kB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.7.1 importlib_metadata/4.10.0 pkginfo/1.8.2 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.8.12
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