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llama-index readers pdb integration

Project description

Protein Data Bank (PDB) publication Loader

This loader fetches the abstract of PDB entries using the RCSB (Research Collaboratory for Structural Bioinformatics) or EBI (European Bioinformatics Institute) REST api.


To use this loader, simply pass an array of PDB ids into load_data:

from llama_hub.pdb import PdbAbstractReader

loader = PdbAbstractReader()
documents = loader.load_data(pdb_id=["1cbs"])

This loader is designed to be used as a way to load data into LlamaIndex and/or subsequently used as a Tool in a LangChain Agent. See here for examples.

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