lobster-visualization 1.0.0

Visualization agent for Lobster AI - publication-quality plots and interactive visualizations

lobster-visualization

Publication-quality plots and interactive visualizations for bioinformatics data analysis.

Installation

pip install lobster-visualization

Agents

Agent	Description
visualization_expert	General-purpose visualization agent for creating publication-ready figures across all omics data types.

Services

Service	Purpose
VisualizationService	Core plotting engine with Plotly-based interactive visualizations

Features

• UMAP plots with automatic point size scaling based on cell count
• PCA plots with variance explained annotations
• t-SNE visualizations for dimensionality reduction
• Violin plots for gene expression distribution by cluster
• Feature plots showing expression intensity on embeddings
• Dot plots for marker gene comparison across clusters
• Heatmaps with optional row and column standardization
• Elbow plots for PCA variance analysis and component selection
• Cluster composition stacked bar charts for sample contribution
• QC plots with scientific validation (skips inappropriate modalities)
• Interactive Plotly figures with zoom, pan, and hover tooltips
• Static PNG export for publication and presentation use
• Consistent color palettes across related visualizations
• Automatic figure sizing based on data dimensions

Requirements

• Python 3.12+
• lobster-ai >= 1.0.0
• plotly

Documentation

Full documentation: docs.omics-os.com/docs/agents/visualization

License

AGPL-3.0-or-later