Bluelake data analysis tools
Project description
Pylake is a Python package for analyzing single-molecule optical tweezer data.
Its main features include:
- Analyzing HDF5 and TIFF data obtained with Bluelake: Pylake provides a convenient interface to read, analyze and plot data obtained with Bluelake.
- Correlating data: Provides functionality to correlate optical tweezer and imaging data.
- Fitting force-extension curves: Pylake provides tools to (globally) fit polymer models to force-extension data.
- Force calibration routines: The package contains algorithms to calibrate optical tweezer data using power spectral density estimation.
- Kymotracker: Tracks single molecules in a kymograph and computes binding rates and diffusion constants.
Please see the documentation for more information.
Citing
Pylake is free to use under the conditions of the Apache-2.0 open source license.
If you wish to publish results produced with this package, please mention the package name and cite the Zenodo DOI for this project:
You'll find a "Cite as" section at the bottom right of the Zenodo page. You can select a citation style from the dropdown menu or export the data in BibTeX and similar formats.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
lumicks.pylake-1.5.2.tar.gz
(694.6 kB
view hashes)
Built Distribution
lumicks.pylake-1.5.2-py3-none-any.whl
(793.5 kB
view hashes)
Close
Hashes for lumicks.pylake-1.5.2-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 9994f5a8a5a2ddb21e76d1f212caf496920ca1dd2ba01179af87131f3d996996 |
|
MD5 | 3de34886e254bd4d7c38d4d088715d81 |
|
BLAKE2b-256 | b4fae8675ac94e6b6e7ed87a32676173f7385ed460d378fc77f0cd5d758b2595 |