madsci.squid 0.6.0rc7

The Modular Autonomous Discovery for Science (MADSci) Control Server and Scheduler, aka Squid.

MADSci Squid (Lab Manager)

Central lab configuration manager and web dashboard provider for MADSci-powered laboratories.

Features

• Lab Management: Central configuration and coordination point for all lab services
• Web Dashboard: Vue-based interface for monitoring and controlling lab operations
• Service Discovery: Provides lab context and service URLs to other components
• Static File Serving: Hosts the dashboard UI and provides lab-wide file access
• CORS Support: Enables cross-origin requests from dashboard to services

Installation

See the main README for installation options. This package is available as:

• PyPI: pip install madsci.squid
• Docker: Use ghcr.io/ad-sdl/madsci_dashboard for complete setup with UI
• Example configuration: See example_lab/managers/example_lab.manager.yaml

Usage

Quick Start

Use the example_lab as a starting point:

# Start complete lab with dashboard
docker compose up  # From repo root
# Dashboard available at http://localhost:8000

# Or run standalone (without dashboard)
python -m madsci.squid.lab_server

Lab Manager Setup

Create a lab definition file:

# lab.yaml
name: My_Lab
description: My MADSci-powered laboratory
manager_type: lab_manager
manager_id: 01JVDFED2K18FVF0E7JM7SX09F  # Generate with ulid

Run the lab manager:

# With dashboard (requires built UI files)
python -m madsci.squid.lab_server --lab-dashboard-files-path ./ui/dist

# Without dashboard
python -m madsci.squid.lab_server --lab-dashboard-files-path None

Integration with MADSci Ecosystem

The Lab Manager provides centralized coordination:

# Lab Manager serves context to all services
# Available at http://localhost:8000/context

{
  "lab_server_url": "http://localhost:8000",
  "event_server_url": "http://localhost:8001",
  "experiment_server_url": "http://localhost:8002",
  "resource_server_url": "http://localhost:8003",
  "data_server_url": "http://localhost:8004",
  "workcell_server_url": "http://localhost:8005",
  "location_server_url": "http://localhost:8006"
}

Dashboard Features

The web dashboard provides real-time lab monitoring and control:

Core Panels

• Workcells: Monitor workcell status, view running workflows, submit new workflows
• Workflows: Browse workflow history, view execution details, manage workflow lifecycle
• Resources: Explore resource inventory, view container hierarchies, track consumables
• Experiments: Monitor experimental campaigns, view experiment runs and status

Administrative Controls

• Node Management: View node status, send admin commands (pause, resume, safety stop)
• Workcell Controls: Pause/resume workcells, view current operations
• Resource Operations: Add new resources, update quantities, manage containers
• Real-time Updates: Live status updates across all lab components

Development

For dashboard development, see ui/README.md.

Configuration

Lab Definition

name: Production_Lab
description: Production MADSci Laboratory
manager_type: lab_manager
manager_id: 01JVDFED2K18FVF0E7JM7SX09F

Environment Variables

Lab Manager Settings (LAB_ prefix):

# Core Lab Manager Configuration
LAB_SERVER_URL=http://localhost:8000              # Lab manager server URL
LAB_DASHBOARD_FILES_PATH=./ui/dist                # Path to dashboard static files (set to None to disable)
LAB_MANAGER_DEFINITION=lab.manager.yaml           # Path to lab definition file

# Additional settings inherited from ManagerSettings:
LAB_VERBOSE=false                                 # Enable verbose logging
LAB_LOG_LEVEL=INFO                               # Logging level
LAB_CORS_ALLOWED_ORIGINS=["*"]                   # CORS origins for dashboard

Service URLs (for context endpoint - other manager settings):

# Manager Service URLs (used by /context endpoint)
EVENT_SERVER_URL=http://localhost:8001          # Event manager
EXPERIMENT_SERVER_URL=http://localhost:8002     # Experiment manager
RESOURCE_SERVER_URL=http://localhost:8003       # Resource manager
DATA_SERVER_URL=http://localhost:8004           # Data manager
WORKCELL_SERVER_URL=http://localhost:8005       # Workcell manager
LOCATION_SERVER_URL=http://localhost:8006       # Location manager

Configuration Files (alternative to environment variables):

• .env or lab.env - Environment variable file
• settings.toml or lab.settings.toml - TOML configuration
• settings.yaml or lab.settings.yaml - YAML configuration
• settings.json or lab.settings.json - JSON configuration

API Endpoints

The Lab Manager provides REST endpoints for lab coordination:

Core Endpoints

GET /context - Lab-wide service URLs and configuration

{
  "lab_server_url": "http://localhost:8000",
  "event_server_url": "http://localhost:8001",
  "experiment_server_url": "http://localhost:8002",
  "resource_server_url": "http://localhost:8003",
  "data_server_url": "http://localhost:8004",
  "workcell_server_url": "http://localhost:8005",
  "location_server_url": "http://localhost:8006"
}

GET /health - Service health check

{
  "healthy": true,
  "description": "Lab Manager is running"
}

GET /lab_health - Comprehensive lab health status

{
  "healthy": true,
  "description": "5/6 managers are healthy",
  "managers": {
    "event_manager": {"healthy": true, "description": "Event Manager is running"},
    "experiment_manager": {"healthy": true, "description": "Experiment Manager is running"},
    "resource_manager": {"healthy": false, "description": "Failed to connect: Connection refused"},
    "data_manager": {"healthy": true, "description": "Data Manager is running"},
    "workcell_manager": {"healthy": true, "description": "Workcell Manager is running"},
    "location_manager": {"healthy": true, "description": "Location Manager is running"}
  },
  "total_managers": 6,
  "healthy_managers": 5
}

GET /definition - Lab definition and metadata

{
  "name": "Example_Lab_Manager",
  "description": "A simple example of a lab manager definition",
  "manager_id": "01JVDFED2K18FVF0E7JM7SX09F",
  "manager_type": "lab_manager"
}

Static File Serving

• Dashboard files served at root / when LAB_DASHBOARD_FILES_PATH is configured
• HTML fallback routing for SPA navigation
• API routes take precedence over static files

Health Check Details

• Lab Health Algorithm: Lab considered healthy if >50% of configured managers are healthy
• Timeout: 5-second timeout for health check requests to managers
• Error Handling: Failed managers marked with specific error descriptions

Full API documentation: Available at http://localhost:8000/docs when running

Examples: See example_lab/ for complete lab setup with dashboard integration.