Client for Mainzelliste, a pseudonymization service.
Project description
mainzelliste-client
Python client for the mainzelliste, a pseudonymization service
Installation
pip install mainzelliste-client
Usage
Basic Example
from mainzelliste_client import MainzellisteClient
example_key = 'e8KcR1vcOLOTY0lRC7RjnMbdr4ARYIGurhEUZSpbvqU='
with MainzellisteClient(base_url='http://localhost:8081', api_key=example_key) as client:
new_patient_id = client.generate_patient_id('5Yp0E')
print(new_patient_id) # PQRYHQG0
Setup a test Mainzelliste instance
- Go in the
tests/docker/directory
cd tests/docker/
- Run the docker compose
docker-compose up -d
- Mainzelliste should be at http://localhost:8081/
API Reference
MainzellisteClient
__init__(base_url, api_key, api_version="2.0")
Initialize the Mainzelliste client.
Parameters:
-
base_url(str): Base URL of the Mainzelliste service -
api_key(str): API key for authentication -
api_version(str, optional): API version to use (default: "2.0")
generate_patient_id(patient_id)
Generate a new pseudonymized patient ID using the Mainzelliste API. This is the main method for users to pseudonymize patient identifiers.
This method handles the complete workflow: creating a session, generating a token, and adding the patient to get a new pseudonymized ID.
Parameters:
patient_id(str): Original patient ID to be pseudonymized
Returns: String containing the new pseudonymized patient ID.
Example:
with MainzellisteClient(base_url='http://localhost:8081', api_key='your-api-key') as client:
new_id = client.generate_patient_id('patient-123')
print(f"Pseudonymized ID: {new_id}")
create_session()
Create a new session.
Returns: Dictionary containing session information with a uri field.
create_token(session_id, token_type, idtypes=None, fields=None, ids=None)
Create a token for a session.
Parameters:
-
session_id(str): The session ID -
token_type(str): Type of token (e.g., "addPatient") -
idtypes(list, optional): List of ID types to generate (default: ["pid"]) -
fields(dict, optional): Patient fields (default: {}) -
ids(dict, optional): Patient IDs (default: {})
Returns: Dictionary containing token information with a tokenId field.
add_patient(token_id, sureness=True)
Add a patient using a token.
Parameters:
-
token_id(str): The token ID for adding the patient -
sureness(bool, optional): Whether the data is certain (default: True)
Returns: Dictionary containing patient information.
close()
Close the underlying session.
License
See LICENSE file for details.
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