Utilities for metagoflow and marine omics demos
Project description
marine-omics
Package of utilities for FAIR-Ease demo workflows.
These methods are currently use only for FAIR-EASE pilot demos, but eventually they can serve for general purpose manipulation of metagenomic data, locally and in VREs.
The idea is to provide testable methods to allow as much flexibility and remixing of the functionalities provided
European Marine Omics Biodiversity Observation Network
Specifically, we aim primarily to manipulate EMO-BON marine genomics sampling data and metadata from ENA project PRJEB51688. The interactive dashboards and jupyter notebooks built on top of this repository can be found here.
The methods are mixture of statistical methods, plotting functionalities, metadata and data handling utilities and generators of holoviz panel widgets and panes. Experimental integration to Galaxy uses a wrapper around bioblend.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file marine_omics-0.1.3.tar.gz.
File metadata
- Download URL: marine_omics-0.1.3.tar.gz
- Upload date:
- Size: 31.4 kB
- Tags: Source
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/6.1.0 CPython/3.12.9
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
f76cb9487a8558c7dc7e95cf0b47bcc0a8886097e4ad7d7899d25bfbfd2c7ed0
|
|
| MD5 |
3ac9189e54170dee3ffe56220101c70f
|
|
| BLAKE2b-256 |
2030d42a89f555561737d754d4cd2a82a4cc8d8668adc522623753e0bcfbeec4
|
Provenance
The following attestation bundles were made for marine_omics-0.1.3.tar.gz:
Publisher:
test_deploy.yml on emo-bon/marine-omics-methods
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
marine_omics-0.1.3.tar.gz -
Subject digest:
f76cb9487a8558c7dc7e95cf0b47bcc0a8886097e4ad7d7899d25bfbfd2c7ed0 - Sigstore transparency entry: 217915095
- Sigstore integration time:
-
Permalink:
emo-bon/marine-omics-methods@23a44534a0d22b0964ae90bf3be4cf16ec1a6a42 -
Branch / Tag:
refs/tags/v0.1.3 - Owner: https://github.com/emo-bon
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
test_deploy.yml@23a44534a0d22b0964ae90bf3be4cf16ec1a6a42 -
Trigger Event:
push
-
Statement type:
File details
Details for the file marine_omics-0.1.3-py3-none-any.whl.
File metadata
- Download URL: marine_omics-0.1.3-py3-none-any.whl
- Upload date:
- Size: 37.3 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/6.1.0 CPython/3.12.9
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
b5ffdadeecf88d10712904dee9b160bda72271896d1d42d769b9bdb62ee5c5f8
|
|
| MD5 |
b39f3337c5c463232fa145a7b412d826
|
|
| BLAKE2b-256 |
075eb82d2f644cf4f4c54a54ffd8e44ad2c960e624efe940c8e07364b41c07d5
|
Provenance
The following attestation bundles were made for marine_omics-0.1.3-py3-none-any.whl:
Publisher:
test_deploy.yml on emo-bon/marine-omics-methods
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
marine_omics-0.1.3-py3-none-any.whl -
Subject digest:
b5ffdadeecf88d10712904dee9b160bda72271896d1d42d769b9bdb62ee5c5f8 - Sigstore transparency entry: 217915100
- Sigstore integration time:
-
Permalink:
emo-bon/marine-omics-methods@23a44534a0d22b0964ae90bf3be4cf16ec1a6a42 -
Branch / Tag:
refs/tags/v0.1.3 - Owner: https://github.com/emo-bon
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
test_deploy.yml@23a44534a0d22b0964ae90bf3be4cf16ec1a6a42 -
Trigger Event:
push
-
Statement type:
