Skeletonization and graph-based feature extraction for branching biological structures — vasculature, fibers, neurites, and other network-like objects — from 2D or 3D binary or multi-label segmentation masks.
Maskel is the core algorithm package: thinning, feature extraction, and the batch CLI. For the napari plugin, see napari-maskel. For benchmarks and the HRF-based analysis notebooks, see maskel-evaluations.
Full documentation: https://bionetslab.github.io/maskel/
License
Maskel is released under the MIT License. See LICENSE for details.
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