Accurate and fast data processing for metabolomics
Project description
MassCube
masscube is an integrated Python package for liquid chromatography-mass spectrometry (LC-MS) data processing.
- Documentation: https://huaxuyu.github.io/masscubedocs/
- Source code: https://github.com/huaxuyu/masscube/
- Bug reports: https://github.com/huaxuyu/masscube/issues/
It provides:
- Highly accurate nontargeted peak detection and segmentation.
- Comprehensive feature quality evaluation.
- Confident annotation of feature groups including isotopes, adducts and in-source fragments.
- Annotation of MS/MS spectra via identity search and fuzzy search (i.e. analog search).
Installation
To install masscube, open a terminal and run:
pip install masscube
To upgrade masscube to the latest version, run:
pip install masscube --upgrade
Quick start
Start your nontargeted metabolomics data processing from here
Contribute to masscube
The masscube project is excited to have your expertise and passion on board!
We value all enhancements or corrections. For those thinking about making significant contributions to the codebase, we encourage you to get in touch with us!
- Huaxu Yu, hxuyu@ucdavis.edu
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file masscube-1.2.14.tar.gz.
File metadata
- Download URL: masscube-1.2.14.tar.gz
- Upload date:
- Size: 61.4 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/5.0.0 CPython/3.11.7
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
4ed6a4d009800f1c4b6065043d44e7ad6da9fc68eedd587d343c804bb9a0a16e
|
|
| MD5 |
9d03c4d34ebe4da5e9e81089f2aa64d3
|
|
| BLAKE2b-256 |
c020bc18e6c05ac7bd52b5100224bed68de110cb816d8b9f581c3eeef0665ac9
|
File details
Details for the file masscube-1.2.14-py3-none-any.whl.
File metadata
- Download URL: masscube-1.2.14-py3-none-any.whl
- Upload date:
- Size: 68.4 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/5.0.0 CPython/3.11.7
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
0fe4f1fd1eddaa29b6811198781a29bc897fc10c62efdb59c11b6f53b314da98
|
|
| MD5 |
8591f6bcf0b94e2943e82b8fdb425c6e
|
|
| BLAKE2b-256 |
27abd364f6ce16b6c324b5e2088875d94926e70aba27131f3787d85205780cbd
|
