Python implementation of SAIBR: a tool for performing spectral autofluorescence correction on biological images
Project description
matplotlib-polyroi
Module for selecting polygonal ROIs on images, spline fitting and ROI expansion
Installation
pip install matplotlib-polyroi
Instructions
See demonstration notebook for instructions on usage.
To run notebook in the cloud, click 'launch binder' above.
To run on your local machine, follow these steps:
1. Clone the repository:
git clone https://github.com/tsmbland/matplotlib-polyroi.git
cd matplotlib-polyroi
2. Create conda environment:
conda env create -f environment.yml
3. Activate conda environment:
conda activate matplotlib-polyroi
4. Open jupyter notebook:
jupyter notebook scripts/Demonstration.ipynb
License
This work is licensed under a Creative Commons Attribution 4.0 International License.
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matplotlib-polyroi-0.1.4.tar.gz
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