matplotlib-polyroi 0.1.4

Python implementation of SAIBR: a tool for performing spectral autofluorescence correction on biological images

matplotlib-polyroi

Module for selecting polygonal ROIs on images, spline fitting and ROI expansion

Installation

pip install matplotlib-polyroi

Instructions

See demonstration notebook for instructions on usage.

To run notebook in the cloud, click 'launch binder' above.

To run on your local machine, follow these steps:

⁣1. Clone the repository:

git clone https://github.com/tsmbland/matplotlib-polyroi.git
cd matplotlib-polyroi

⁣2. Create conda environment:

conda env create -f environment.yml

⁣3. Activate conda environment:

conda activate matplotlib-polyroi

⁣4. Open jupyter notebook:

jupyter notebook scripts/Demonstration.ipynb

License

This work is licensed under a Creative Commons Attribution 4.0 International License.