mbdb-parsing 0.1.0

Extract metadata from raw datafiles instruments within the MBDB

mbdb-parsing

Description

Set of processors for InvenioRDM/OArepo style repository that allows for extraction and conversion of metadata from raw measurements files. See below for the list of supported file types.

MST

• .moc
• .moc2
• .xlsx

Requirements

• Python >=3.12

Installation

pip install mbdb-parsing

Or add mbdb-parsing to the dependencies inside the app's pyproject.toml:

[project]
dependencies = [
    "mbdb-parsing",
]

Configuration

The processors should be placed inside FileServiceConfig(s) objects:

from invenio_records_resources.services import FileServiceConfig
from oarepo_runtime.services.config.service import PermissionsPresetsConfigMixin

from mbdb-parsing.mst import MocProcessor, XlxsProcessor


class MstFilesServiceConfig(PermissionsPresetsConfigMixin, FileServiceConfig):
    file_processors = [
        MocProcessor(),
        XlxsProcessor(),
    ]
    components = [
        *PermissionsPresetsConfigMixin.components,
        *FileServiceConfig.components,
    ]