Atlassian Jira MCP Server

Base URL: https://.atlassian.net

Category	Productivity
Tools	295
Auth	HTTP Basic, OAuth2

API Info

• API License: Apache 2.0 — http://www.apache.org/licenses/LICENSE-2.0.html
• Terms of Service: https://developer.atlassian.com/platform/marketplace/atlassian-developer-terms/

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Install

Quick Start (recommended)

OAUTH2_CLIENT_ID=YOUR_OAUTH2_CLIENT_ID \
OAUTH2_CLIENT_SECRET=YOUR_OAUTH2_CLIENT_SECRET \
OAUTH2_SCOPES=YOUR_OAUTH2_SCOPES \
BASIC_AUTH_USERNAME=YOUR_BASIC_AUTH_USERNAME \
BASIC_AUTH_PASSWORD=YOUR_BASIC_AUTH_PASSWORD \
SERVER_YOUR_DOMAIN=YOUR_SERVER_YOUR_DOMAIN \
uvx mcparmory-atlassian-jira

With pip

pip install mcparmory-atlassian-jira
OAUTH2_CLIENT_ID=YOUR_OAUTH2_CLIENT_ID \
OAUTH2_CLIENT_SECRET=YOUR_OAUTH2_CLIENT_SECRET \
OAUTH2_SCOPES=YOUR_OAUTH2_SCOPES \
BASIC_AUTH_USERNAME=YOUR_BASIC_AUTH_USERNAME \
BASIC_AUTH_PASSWORD=YOUR_BASIC_AUTH_PASSWORD \
SERVER_YOUR_DOMAIN=YOUR_SERVER_YOUR_DOMAIN \
mcparmory-atlassian-jira

MCP Client Configuration

Add to your MCP client config (e.g. Claude Desktop, Cursor, Codex):

{
  "mcpServers": {
    "atlassian-jira": {
      "command": "uvx",
      "args": ["mcparmory-atlassian-jira"],
      "env": {
        "OAUTH2_CLIENT_ID": "YOUR_OAUTH2_CLIENT_ID",
        "OAUTH2_CLIENT_SECRET": "YOUR_OAUTH2_CLIENT_SECRET",
        "OAUTH2_SCOPES": "YOUR_OAUTH2_SCOPES",
        "BASIC_AUTH_USERNAME": "YOUR_BASIC_AUTH_USERNAME",
        "BASIC_AUTH_PASSWORD": "YOUR_BASIC_AUTH_PASSWORD",
        "SERVER_YOUR_DOMAIN": "YOUR_SERVER_YOUR_DOMAIN"
      }
    }
  }
}

Set OAUTH2_SCOPES to a comma-separated list of scopes your app requires (e.g. OAUTH2_SCOPES=scope_a,scope_b). Some OAuth2 providers may also use additional scope env vars such as OAUTH2_USER_SCOPES; open .env to see all generated scope buckets and descriptions.

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Credentials

Set the following environment variables (via MCP client env config, shell export, or .env file):

• OAUTH2_CLIENT_ID — OAuth2 client ID
• OAUTH2_CLIENT_SECRET — OAuth2 client secret
• OAUTH2_SCOPES — OAuth2 scopes (comma-separated)
• BASIC_AUTH_USERNAME — Username
• BASIC_AUTH_PASSWORD — Password
• SERVER_YOUR_DOMAIN — Your subdomain from the URL bar when logged in (the part before .atlassian.net).

Do not commit credentials to version control.

OAuth2

Add this redirect URI to your OAuth provider's allowed redirect URIs:

http://localhost:9400/callback

If you change OAUTH2_CALLBACK_PORT in .env, update the redirect URI to match.

On first use, a browser window opens automatically for OAuth authorization. Grant access when prompted — tokens are saved to tokens/oauth2_tokens.json and refreshed automatically.

Re-authorization: Delete tokens/oauth2_tokens.json and restart the server.

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Run Locally

First, configure your credentials in .env (see Credentials above).

pip install -r requirements.txt
python server.py

Connect MCP Client

Edit .mcp.json and replace <SERVER_DIR> with the absolute path to this directory, then add to your MCP client configuration.

Example (if server is at /home/user/mcp-servers/atlassian-jira):

{
  "mcpServers": {
    "atlassian-jira": {
      "command": "python",
      "args": ["/home/user/mcp-servers/atlassian-jira/server.py"]
    }
  }
}

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Docker

Pre-built image (recommended)

docker run -p 8000:8000 -p 9400:9400 -v ./tokens:/app/tokens \
  -e OAUTH2_CLIENT_ID=YOUR_OAUTH2_CLIENT_ID \
  -e OAUTH2_CLIENT_SECRET=YOUR_OAUTH2_CLIENT_SECRET \
  -e OAUTH2_SCOPES=YOUR_OAUTH2_SCOPES \
  -e BASIC_AUTH_USERNAME=YOUR_BASIC_AUTH_USERNAME \
  -e BASIC_AUTH_PASSWORD=YOUR_BASIC_AUTH_PASSWORD \
  -e SERVER_YOUR_DOMAIN=YOUR_SERVER_YOUR_DOMAIN \
  ghcr.io/mcparmory/atlassian-jira:latest

Build from source

First, configure your credentials in .env (see Credentials above).

docker build -t atlassian-jira .
mkdir -p tokens
docker run -p 8000:8000 -p 9400:9400 -v ./tokens:/app/tokens --env-file .env atlassian-jira

Before running, make sure ports 8000, 9400 are free. If you changed the callback port in .env, update the -p port mapping and your OAuth provider's redirect URI to match.

On first run, the server prints an authorization URL — check docker logs for the URL. Open it in your browser to complete OAuth consent. Tokens are persisted to ./tokens/ via the volume mount so re-authorization is not needed on subsequent runs.

MCP client config (Docker)

For Docker, use SSE transport in your MCP client config:

{
  "mcpServers": {
    "atlassian-jira": {
      "type": "sse",
      "url": "http://localhost:8000/sse"
    }
  }
}

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Files

• .env - Credentials and server configuration
• .mcp.json - MCP client config template
• Dockerfile - Container build
• LICENSE - MIT license for this generated code
• requirements.txt - Python dependencies
• README.md - This file
• server.py - MCP server entry point
• _auth.py - Authentication handlers
• _models.py - Request/response models
• _validators.py - Input validation

Note: Files starting with . are hidden by default on macOS/Linux. Use ls -a in terminal or enable "Show hidden files" in your file manager to see .env and .mcp.json.

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