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mcp-audit

Static security + correctness audit for MCP server repos, in Python and TypeScript/JavaScript.

pip install mcp-audit
mcp-audit                     # scan the current directory
mcp-audit /path/to/repo       # scan a specific repo
mcp-audit --json              # machine-readable output
mcp-audit --check fastmcp_wrapper_layer  # one check only
mcp-audit --list-checks       # list available checks

Exit codes: 0 clean, 1 at least one finding, 2 usage error.

What it checks

Check ID Severity What it finds
starlette_badhost HIGH / MED Starlette < 1.0.1 in pyproject.toml, requirements*.txt, uv.lock, poetry.lock, pdm.lock. BadHost (CVE-2026-48710) lets a crafted HTTP Host header bypass path-based authorization. Affects any HTTP/SSE-transport MCP server. Stdio servers are unaffected.
fastmcp_wrapper_layer HIGH Sync @mcp.tool() functions that call asyncio.run(...) inside their body. FastMCP invokes tools inside an already-running event loop; asyncio.run() raises RuntimeError. Looks fine in unit tests, dies on the first real protocol call.
tool_input_validation LOW @mcp.tool() parameters typed as bare str / bytes / Any / list[Any] / dict[..., Any] or with no annotation at all. The schema FastMCP exposes to the LLM is the substrate prompt-injection-via-tool-description attacks rely on; constraining it (Annotated[str, Field(max_length=N)], Literal[...], Pydantic models) closes the window without losing expressiveness. Hygiene check, not a CVE — expect findings even on well-written servers. Added in v0.2.
command_injection HIGH @mcp.tool() functions where a tool parameter (or a local tainted via assignment / .format() / string concat) flows into os.system, os.popen, or subprocess.* with shell=True or a tainted-interpolated command string. v0.4 added same-file cross-function taint propagation: the analyzer now follows local helper calls (positional + keyword binding, recursion-visited guard), so tool -> helper -> sink flows are caught. Cross-file taint remains out of scope. The list-of-args / no-shell pattern is correctly NOT flagged. Added in v0.3, cross-function in v0.4.
destructive_fs_sink MEDIUM @mcp.tool() functions where a tool parameter flows into a destructive filesystem call — shutil.rmtree, os.remove / os.unlink / os.rmdir / os.removedirs, or Path.unlink() / Path.rmdir() — with no path-containment guard, letting a caller delete arbitrary paths the server can reach. Suppressed when the function canonicalizes-and-confines the path (realpath/resolve + startswith/relative_to) or checks it against a server-managed allow-set — a deliberate false-negative bias. Found the unguarded shutil.rmtree(directory) in manim-mcp-server's cleanup_manim_temp_dir that the other four checks all miss. Added in v0.7.
sql_readonly_keyword_guard MEDIUM @mcp.tool() functions that enforce "read-only" / safe SQL by inspecting the query string for keywords (allow only queries starting with SELECT/WITH, or block INSERT/UPDATE/DELETE by substring) and then execute a tool-parameter query. Keyword / prefix filters are not a security boundary: a WITH-prefixed statement, a comment, casing, or ATTACH slips a write past them. Fix is connection-level read-only (mode=ro, PRAGMA query_only=ON, a SELECT-only role). Recognizes the exact anti-pattern behind the 2026 sqlite-explorer-fastmcp read-only bypass; does not fire on arbitrary-SQL tools (no guard to be weak) or on connection-level read-only (the correct pattern). Added in v0.8.

| ts_dns_rebinding | HIGH | TypeScript. StreamableHTTPServerTransport / SSEServerTransport constructed without DNS-rebinding protection, in a repo with no authentication check. enableDnsRebindingProtection defaults to false on the constructor (GHSA-w48q-cv73-mx4w / CVE-2025-66414, CVSS 7.6), so the transport accepts any Host and any Origin. A page the victim visits can re-point its own hostname at 127.0.0.1 and call the endpoint as same-origin, reaching tools/list and tools/call at local privilege. Binding to localhost does not mitigate it, and CORS never runs. Suppressed by enableDnsRebindingProtection: true + allowedHosts/allowedOrigins, by an independent host gate or hostHeaderValidation(), by any repo-wide auth check, and entirely for stdio-only servers. Added in v0.9. | | ts_command_injection | HIGH | TypeScript. An MCP tool parameter reaching child_process.exec/execSync, or spliced into a shell command string, or landing in the executable position. The safe array-argv-without-shell: true pattern is correctly not flagged, and a value is only counted when the splice is visible (a template hole, a + concat, or the raw parameter) — an allow-list table lookup does not fire. Added in v0.9. | | ts_destructive_fs_sink | MEDIUM | TypeScript. An MCP tool parameter reaching fs.rm/rmSync/unlink/rmdir/promises.rm or rimraf with no path-containment guard. Suppressed by canonicalize-and-confine (path.resolve + startsWith/relative), by an allow-set, by a closed-set schema (z.enum/literal/number) that cannot express traversal, and when the path came back from an opaque call rather than from the caller. Added in v0.9. | | ts_tool_input_validation| LOW | TypeScript. MCP tool input schemas that constrain nothing: z.any(), a bare z.string() with no length/pattern/format, a handler parameter typed any, or a registerTool whose handler destructures arguments it never declared. Recognizes constraint methods by exclusion — only provably transparent wrappers (.describe(), .optional(), .default(), …) count as unconstrained — so new zod formats degrade to false negatives, not false positives. Hygiene, not a vulnerability: expect findings on well-written servers. Added in v0.9. |

Two engines, one scan

The six checks above the divider read Python via ast; the four ts_-prefixed checks read TypeScript/JavaScript via a stdlib-only masking lexer (mcp_audit.jsparse). Both engines run on every scan — a repo may contain both, and a scanner that silently skipped one language would hand back a clean bill of health it had not earned. Before v0.9 that is exactly what mcp-audit did to every TypeScript MCP server: OK — 0 findings, without opening a file.

There is no parser dependency and never will be one: pip install mcpdone-audit must not pull node, tree-sitter, or a wasm blob. The lexer instead produces a masked copy of the source, byte-for-byte the same length, with comments and string contents blanked so offsets and line numbers stay exact. Template-literal ${...} holes stay live, since exec(`git checkout ${branch}`) is the shape the injection check exists to find. When the lexer cannot walk a file cleanly it marks it degraded and every check returns nothing for it — a mis-lexed file must never produce a finding.

More checks are landing — hard-coded secrets leaked into tool output, write-API tools missing a FORBIDDEN_NAMES-style guardrail, path traversal in filesystem-touching servers, and SSRF via tool-controlled URLs.

Output format

$ mcp-audit examples/bad/
[HIGH  ] starlette_badhost @ uv.lock
           uv lockfile pins starlette==0.36.3 — vulnerable to BadHost (CVE-2026-48710). Patched in 1.0.1.
           -> Upgrade Starlette to >=1.0.1 (the BadHost patch). If FastAPI pulls Starlette transitively, pin it explicitly. ...

[HIGH  ] fastmcp_wrapper_layer @ server.py:18
           tool 'fetch_url' (def) calls asyncio.run() inside its body. FastMCP invokes tools inside an already-running event loop, and asyncio.run() raises RuntimeError when nested. This will fail at the first real MCP protocol call even if every unit test passes.
           -> Convert the tool to `async def` and replace `asyncio.run(...)` with `await`. ...

mcp-audit: 2 finding(s) — 2 high

--json emits one object: {"root": "...", "finding_count": N, "findings": [...]}. Each finding has check, severity, path, line, message, remediation.

Use in CI (GitHub Action)

Drop MCP security scanning into any repo's CI. The job fails on findings (exit 1); flip fail-on-findings for a report-only gate.

# .github/workflows/mcp-audit.yml
name: mcp-audit
on: [push, pull_request]
jobs:
  audit:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - uses: Alienbushman/mcpdone-samples/mcp-audit@master
        with:
          path: .                 # dir to scan (default '.')
          # version: 0.8.0        # pin the mcpdone-audit release (default: latest)
          # args: --check command_injection
          # fail-on-findings: false   # report-only: annotate but keep the job green

The action exposes a finding-count output for downstream steps. It wraps the same mcpdone-audit PyPI package, so local runs and CI runs are identical. Prefer pinning version: in CI for reproducibility.

You can also run it via pre-commit or as a plain pip install mcpdone-audit && mcp-audit step in any pipeline.

What this is not

  • It is not a runtime sandbox. Static analysis only.
  • It does not install your venv to introspect it. It reads what's declared (manifests + lockfiles + source).
  • It will not detect every vulnerability — only the classes its checks know about. Treat zero findings as "no known issues from this tool," not as a clean bill.

Background

Development

git clone https://github.com/Alienbushman/mcpdone-samples
cd mcpdone-samples/mcp-audit
pip install -e ".[dev]"
pytest
python smoke_test.py

To add a check: drop src/mcp_audit/checks/<name>.py exposing a module-level CHECK_ID and a check(root: Path) -> list[Finding] callable. Register it in src/mcp_audit/checks/__init__.py. Add fixtures + tests under tests/.

License

MIT.

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