Harmonize compounds and reactions across public metabolic databases.
Project description
md_harmonize package provides facilities for creation and harmonization of compounds and reactions.
Citation
Please cite the GitHub repository until our manuscript is accepted for publication: https://github.com/MoseleyBioinformaticsLab/md_harmonize.git
Installation
md_harmonize runs under Python 3.7+ and is available through python3-pip. Install via pip or clone the git repo and install the following dependencies and you are ready to go!
Install on Linux
Pip installation
python3 -m pip install md-harmonize- Note:
Please add ~/.local/bin/ to the environmental PATH variant in bash_profile if you install the package with –user.
python3-devel is required for package installation.
GitHub Package installation
git clone git@github.com:MoseleyBioinformaticsLab/md_harmonize.gitLicense
Made available under the terms of The modified Clear BSD License. See full license in LICENSE.
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