mdvtools 1.2.4

Multi Dimensional Viewer (MDV) is web based application for analyzing data

MDV Tools Lite

This is a lightweight version of MDV, designed to simplify project creation and deployment. It provides:

• Tools for creating and manipulating MDV projects
• A lightweight server for viewing and modifying projects
• A method to create static websites, making it ideal for projects that require minimal server-side dependencies.

To install from TestPyPi:-

pip install --index-url https://test.pypi.org/simple/ --extra-index-url https://pypi.org/simple/ mdvtools

To install from PyPi

pip install mdvtools

To test, run the script below, which creates and serves a project from the pbmc3k test data. folder is the location where the project will be stored and can be any location that you have write access. A new folder will be created if one does not exist already.

import scanpy
from mdvtools.conversions import convert_scanpy_to_mdv
from mdvtools.serverlite import serve_project
folder = "/path/to/mytestproject"
data = scanpy.datasets.pbmc3k_processed()
proj= convert_scanpy_to_mdv(folder,data)
serve_project(proj)

The MDV project will be in the folder you specified and you can view it by pointing your browser to localhost:5050