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medical dictionaries and ontologies toolkit

Project Description

Medgen-prime is a public fork of Invitae’s “medgen”, a toolkit and API into medgen-mysql.

Medgen-prime improves upon medgen in the following main ways:

* prevention of SQL-injection attacks
* more fine-grained control over GeneDB
* enhanced test framework

Medgen-prime has been extensively tested in production enviroments, particularly for Text2Gene (

To install:

pip install medgen-prime

To use:

import medgen

This is a drop-in replacement for Invitae’s medgen; as such, the two cannot be installed at the same time. You’ll want to pip uninstall medgen before installing medgen-prime.

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