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MediCafe

Project description

MediCafe

MediCafe is a mixed local/cloud healthcare workflow automation repository. It combines legacy clinic-side workflows (MediBot, MediLink, and xp_client) with shared package utilities in MediCafe and a newer Gmail ingestion/orchestration path in cloud/orchestrator.

This repository intentionally supports more than one runtime model. It is not a single deployable app with one entrypoint.

Runtime Tracks

Track Primary code Python Primary use
Local / XP-compatible workflow MediCafe, MediBot, MediLink, xp_client 3.4.4-compatible package path Clinic-side claims, eligibility, deductible, reconciliation, download, and Medisoft-oriented automation
Cloud / orchestrator workflow cloud/orchestrator, tools, docs/runbooks 3.11+ repo-run path Gmail ingestion, queueing, preprocessor validation, alerting, setup, and runtime operations
Shared migration / validation tooling MediCafe, scripts/unified_model, sql, tests Mixed Shadow-pipeline, cloud-readiness, schema, validation, and reporting support

setup.py packages the local/XP-compatible path. The cloud orchestrator is maintained as repo-run code.

Primary Entry Points

Package CLI:

medicafe launcher
python -m MediCafe launcher

Current package commands exposed by MediCafe/__main__.py:

  • medicafe launcher
  • medicafe medibot [config_file]
  • medicafe medilink
  • medicafe claims_status
  • medicafe deductible
  • medicafe download_emails
  • medicafe cloud_daemon [config_file]
  • medicafe send_error_report
  • medicafe send_queued_error_reports
  • python -m MediCafe cleanup_local_artifacts
  • medicafe docx_index_rebuild
  • medicafe preflight
  • medicafe reconcile
  • medicafe version

medicafe deductible is kept as the advanced/compatibility checker. The normal operator path for the consolidated deductible form is inside MediLink Claims as Open deductible report (United, 90-day DOS).

Canonical cloud operator path:

py -3.11 cloud/orchestrator/validate_and_complete_setup.py

Repository Map

  • MediCafe/: shared package, CLI entrypoint, launcher, preflight, cloud-readiness helpers (including Layer 1 Readiness for operator system-health and run-evidence bundles; see MediCafe/layer1_readiness_model.py and AGENTS.md), API utilities, reconciliation, error reporting, and shared runtime helpers
  • MediBot/: Medisoft-oriented local preprocessing and data-entry support scripts
  • MediLink/: claims, eligibility, deductible, remittance, Gmail helper, and Apps Script-related assets
  • cloud/orchestrator/: Cloud Run service, auth/config/runtime helpers, preprocessor gate, watch/admin flows, setup scripts, and cloud tests
  • xp_client/: XP-side cloud queue consumer (medilink_cloud_daemon.py)
  • tests/: main regression suite for package/local workflows, API helpers, launcher behavior, preflight, cloud-readiness, and integration coverage
  • scripts/unified_model/: shadow-pipeline and unified relational validation tooling
  • sql/: SQL artifacts used by migration and validation work
  • docs/: maintained documentation surface
  • tools/: operator and build helpers that are outside the packaged runtime

The workspace root also contains operational inputs, artifacts, and generated state such as input/, TEST_CLAIMS/, ERA_TEST_DUMP/, reports_queue/, archive/, build/, dist/, .pytest_cache/, and tmp*. Do not treat those folders as the canonical source layout.

Local artifact cleanup:

python -m MediCafe cleanup_local_artifacts
python -m MediCafe cleanup_local_artifacts --apply --purge-queue

The cleanup command preserves README markers, defaults to dry-run, and skips queued ZIP bundles unless queue purge or queue-age retention is explicitly requested.

Automatic cleanup runs only from a development checkout (.git present) and only when MEDICAFE_LOCAL_ARTIFACT_AUTOCLEAN is not disabled. It is checked at python -m MediCafe ... startup and before support bundle creation. Defaults: at most once every 6 hours; apply cleanup when generated artifacts exceed 200 files, 250 MB, or 50 queued ZIPs. Ordinary generated artifacts and queued ZIP bundles are pruned immediately once a threshold is crossed. Set MEDICAFE_LOCAL_ARTIFACT_AUTOCLEAN_QUEUE_MAX_AGE_DAYS to a positive value only if a machine needs delayed queue retention.

Configuration

Primary local configuration files:

  • json/config.json
  • json/crosswalk.json
  • json/medisoftconfig.json

Cloud/orchestrator runtime settings are managed through cloud/orchestrator/config.py, environment variables, and the validator/setup flow.

Testing

Main test surfaces:

  • tests/
  • cloud/orchestrator/tests/

Canonical automated test entrypoint:

python3 -m pytest -v

Windows equivalent:

py -3.11 -m pytest -v

XP/Python 3.4.4 local test environments should use the pinned legacy pytest versions from requirements.txt (or pip install .[test]) before running pytest-driven files:

py -3.4 -m pip install -r requirements.txt
py -3.4 -m pytest -q tests/test_json_io.py

pytest.ini collects both test surfaces and excludes the current duplicate-name conflicts plus the known api_factory pytest-incompatible file. For focused runs:

python3 -m pytest -q tests/test_preflight.py
python3 -m pytest -q tests/test_config_loader_diagnostics.py
python3 -m pytest -q tests/test_error_reporter_configloader_degraded.py
python3 -m pytest -q tests/test_launcher_next_step_orchestration.py
python3 -m pytest -q tests/test_cloud_readiness_health.py
python3 -m pytest -q tests/test_cloud_readiness_artifacts.py::TestLayer1ReadinessModel tests/test_cloud_readiness_artifacts.py::TestLayer1ReadinessSurfacesAndContract tests/test_cloud_readiness_artifacts.py::TestSystemHealthPackWiring::test_send_latest_system_health_pack_extra_meta_merges_layer1_readiness_shallow_keys tests/test_cloud_readiness_artifacts.py::TestRunCentricArtifactTools::test_send_latest_run_evidence_bundle_extra_meta_merges_layer1_readiness_shallow_keys tests/test_cloud_readiness_recommendations.py
python3 -m pytest -q tests/test_bundle_build_telemetry.py
python3 -m pytest -q cloud/orchestrator/tests

See docs/TESTING_GUIDE.md for the current suite shape, default excludes, and standalone script-style harnesses that are not part of the canonical pytest run.

Documentation

Start here:

  • docs/README.md
  • docs/MEDICAFE_MASTER_GUIDE.md
  • docs/TESTING_GUIDE.md
  • docs/MEDICAFE_API_ARCHITECTURE.md
  • docs/MEDILINK_CLOUD_MIGRATION.md
  • docs/architecture/CSV_DOCX_DAT_JOIN_SCAFFOLDING_INVENTORY.md (shadow CSV/DOCX/DAT correlation, cloud readiness read path, orchestrator context)
  • cloud/orchestrator/README.md

Security and Repo Hygiene

  • Avoid PHI in logs, reports, and committed artifacts.
  • Use send_error_report and send_queued_error_reports for diagnostics instead of ad hoc data exports.
  • Treat tokens, certificates, raw client secrets, build outputs, and downloaded artifacts as operational state, not documentation or source of truth.

License

MIT License. See LICENSE.

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