Preprocessing and analysis of physiological waveforms
Project description
medical-waveforms
medical-waveforms is a Python package for preprocessing and analysis of physiological waveforms.
This package currently focuses on:
- Splitting waveforms into individual cycles (e.g. splitting a respiratory waveform into individual breaths)
- Extracting features from individual cycles
- Rule-based signal quality assessment
Installation
Install with:
pip install medical-waveforms
The package is tested on Python 3.8 - 3.11.
Getting started
See the tutorial notebook for a general introduction to using the package.
The signal quality assessment notebook demonstrates customisation of the signal quality assessment process.
These tutorials currently focus on arterial blood pressure waveforms, but can be adapted to other physiological waveforms.
Contributing to this project
Contributions are very welcome! Please see CONTRIBUTING.md to get started.
Acknowledgements
Our signal quality assessment pipeline is adapted from that used in the excellent PhysioNet Cardiovascular Signal Toolbox. Many thanks to its contributors.
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