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melizalab-tools

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A collection of python code and scripts used by the Meliza Lab.

To install: pipx install melizalab-tools

modules

  • dlab.pprox: functions for working with pprox objects, a data format for storing multi-trial point process data (e.g. spike times evoked by stimulus presentation).

  • dlab.neurobank: some convenient wrappers for interacting with a neurobank repository and archives.

  • dlab.signal: signal processing functions

console scripts

  • group-kilo-spikes: sort spike times output from kilosort and phy2 into pprox files (stimtrial format), optionally recording pulses on auxiliary channels such as optogenetic stimulation (--aux).

  • get-songs: extract segments from arf files, rescale, resample, save into

    wave files, and optionally deposit back into neurobank. Usually the first step in generating a stimulus set, keeps a nice provenance trail.

other stuff

Metadata

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