merge_fastq
Package to merge multiple pair of pair-end fastq data
Free software: Apache Software License 2.0
Documentation: https://merge-fastq.readthedocs.io.
Features
Given multiple pair-end fastq data merge them into single pair-end fastq w.r.t each READ1 and READ2
Usage
> merge_fastq –help
Usage: merge_fastq [OPTIONS]
Console script for merge_fastq.
- Options:
- -fp1, --fastq1 PATH
Full path to gziped READ1 fastq files, can be specified multiple times for example: –fastq1 test_part1_R1.fastq.gz –fastq1 test_part2_R1.fastq.gz [required]
- -fp2, --fastq2 PATH
Full path to gziped READ2 fastq files, can be specified multiple times for example: –fastq2 test_part1_R2.fastq.gz –fastq2 test_part2_R2.fastq.gz [required]
- -op, --output-path PATH
Full path to write the output files (default: Current working directory)
- -of1, --out-fastq1 TEXT
Name of the merged output READ1 fastq file (default: merged_fastq_R1.fastq.gz)
- -of2, --out-fastq2 TEXT
Name of the merged output READ2 fastq file (default: merged_fastq_R2.fastq.gz)
- --help
Show this message and exit.
Credits
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.
History
0.1.0 (2019-10-21)
First release on PyPI.
1 maintainer
Metadata
1 maintainer
Release files for merge-fastq 0.1.7
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| merge_fastq-0.1.7.tar.gz | 10.8 kB | Without provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| merge_fastq-0.1.7-py2.py3-none-any.whl | Python 2, Python 3 | none | any | Details |
Total release size: 16.6 kB
Release files / merge_fastq-0.1.7.tar.gz
| Download URL | merge_fastq-0.1.7.tar.gz |
|---|---|
| Size | 10.8 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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Release files / merge_fastq-0.1.7-py2.py3-none-any.whl
| Download URL | merge_fastq-0.1.7-py2.py3-none-any.whl |
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| Size | 5.7 kB |
| Tags | Python 2 Python 3 |
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