Build graph database from BRENDA and BioCyc for studying reprogrammed metabolisms.
Project description
A Python package that aggregates the data from BRENDA and BioCyc into one unified graph database. The MetaCyc (BioCyc) database is imported to a graph database using the provided SBML file and various .dat files. A Streamlit app is included in the code for easy route search with both example TCGA datasets and custom CSV files.
To-Do
Add tutorial for the package
Add Dockerfile and docker-compose file
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