Filter reads based on taxonomy assignment from OneCodex.
Project description
# Metasort
A Digital Health Hack Weekend Project using OneCodex API.
Filter reads based on taxonomy assignment from OneCodex.
Upload a Fast(a/q) file and download individual files sorted by species.
## CLI
set your OneCodex API key
export ONE_CODEX_API_KEY=f8xxxxxxxxxxx78
source venv/bin/activate pip install metasort
metasort seq.fa /path/to/outdir
## Web
Usage:
pip install -r requirements python webapp.py
Live demo here:
[https://genome-sort.herokuapp.com/](https://genome-sort.herokuapp.com/)
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