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Metaxy

Overview

Metaxy is a declarative metadata management system for multi-modal data and machine learning pipelines. Metaxy allows statically defining graphs of features with versioned fields -- logical components like audio, frames for .mp4 files and columns for feature metadata stored in Metaxy's metadata store. With this in place, Metaxy provides:

  • Sample-level data versioning: Track field and column lineage, compute versions as hashes of upstream versions for each sample
  • Incremental computation: Automatically detect which samples need recomputation when upstream fields change
  • Migration system: When feature code changes without changing outputs (refactoring, graph restructuring), Metaxy can reconcile metadata versions without recomputing expensive features
  • Storage flexibility: Pluggable backends (DuckDB, ClickHouse, PostgreSQL, SQLite, in-memory) with native SQL optimization where possible
  • Big Metadata: Metaxy is designed with large-scale distributed systems in mind and can handle large amounts of metadata efficiently.

Metaxy is designed for production data and ML systems where data and features evolve over time, and you need to track what changed, why, and whether expensive recomputation is actually necessary.

Data Versioning

To demonstrate how Metaxy handles data versioning, let's consider a video processing pipeline:

from metaxy import (
    Feature,
    FeatureDep,
    FeatureKey,
    FeatureSpec,
    FieldDep,
    FieldKey,
    FieldSpec,
)


class Video(
    Feature,
    spec=FeatureSpec(
        key=FeatureKey(["example", "video"]),
        deps=None,  # Root feature
        fields=[
            FieldSpec(
                key=FieldKey(["audio"]),
                code_version=1,
            ),
            FieldSpec(
                key=FieldKey(["frames"]),
                code_version=1,
            ),
        ],
    ),
):
    """Video metadata feature (root)."""

    frames: int
    duration: float
    size: int


class Crop(
    Feature,
    spec=FeatureSpec(
        key=FeatureKey(["example", "crop"]),
        deps=[FeatureDep(key=Video.spec.key)],
        fields=[
            FieldSpec(
                key=FieldKey(["audio"]),
                code_version=1,
                deps=[
                    FieldDep(
                        feature_key=Video.spec.key,
                        fields=[FieldKey(["audio"])],
                    )
                ],
            ),
            FieldSpec(
                key=FieldKey(["frames"]),
                code_version=1,
                deps=[
                    FieldDep(
                        feature_key=Video.spec.key,
                        fields=[FieldKey(["frames"])],
                    )
                ],
            ),
        ],
    ),
):
    pass  # omit columns for the sake of simplicity


class FaceDetection(
    Feature,
    spec=FeatureSpec(
        key=FeatureKey(["example", "face_detection"]),
        deps=[
            FeatureDep(
                key=Crop.spec.key,
            )
        ],
        fields=[
            FieldSpec(
                key=FieldKey(["faces"]),
                code_version=1,
                deps=[
                    FieldDep(
                        feature_key=Crop.spec.key,
                        fields=[FieldKey(["frames"])],
                    )
                ],
            ),
        ],
    ),
):
    pass


class SpeechToText(
    Feature,
    spec=FeatureSpec(
        key=FeatureKey(["overview", "stt"]),
        deps=[
            FeatureDep(
                key=Video.spec.key,
            )
        ],
        fields=[
            FieldSpec(
                key=FieldKey(["transcription"]),
                code_version=1,
                deps=[
                    FieldDep(
                        feature_key=Video.spec.key,
                        fields=[FieldKey(["audio"])],
                    )
                ],
            ),
        ],
    ),
):
    pass

When provided with this Python module, metaxy graph render --format mermaid (that's handy, right?) produces the following graph:

---
title: Feature Graph
---
flowchart TB
    %% Snapshot version: 8468950d
    %%{init: {'flowchart': {'htmlLabels': true, 'curve': 'basis'}, 'themeVariables': {'fontSize': '14px'}}}%%
        example_video["<div style="text-align:left"><b>example/video</b><br/><small>(v: bc9ca835)</small><br/><font
color="#999">---</font><br/>• audio <small>(v: 22742381)</small><br/>• frames <small>(v: 794116a9)</small></div>"]
        example_crop["<div style="text-align:left"><b>example/crop</b><br/><small>(v: 3ac04df8)</small><br/><font
color="#999">---</font><br/>• audio <small>(v: 76c8bdc9)</small><br/>• frames <small>(v: abc79017)</small></div>"]
        example_face_detection["<div style="text-align:left"><b>example/face_detection</b><br/><small>(v: 1ac83b07)</small><br/><font
color="#999">---</font><br/>• faces <small>(v: 2d75f0bd)</small></div>"]
        example_stt["<div style="text-align:left"><b>example/stt</b><br/><small>(v: c83a754a)</small><br/><font
color="#999">---</font><br/>• transcription <small>(v: ac412b3c)</small></div>"]
        example_video --> example_crop
        example_crop --> example_face_detection
        example_video --> example_stt

Now imagine the audio logical field (don't mix up with metadata columns!) of the very first Video feature has been changed. Perhaps it has been cleaned or denoised.

         key=FeatureKey(["example", "video"]),
         deps=None,  # Root feature
         fields=[
             FieldSpec(
                 key=FieldKey(["audio"]),
-                code_version=1,
+                code_version=2,
             ),

In this case we'd typically want to recompute the downstream Crop, SpeechToText and Embeddings features, but not the FaceDetection feature, since it only depends on frames and not on audio.

metaxy graph diff reveals exactly that:

---
title: Merged Graph Diff
---
flowchart TB
    %%{init: {'flowchart': {'htmlLabels': true, 'curve': 'basis'}, 'themeVariables': {'fontSize': '14px'}}}%%

    example_video["<div style="text-align:left"><b>example/video</b><br/><font color="#CC0000">bc9ca8</font> → <font
color="#00AA00">6db302</font><br/><font color="#999">---</font><br/>- <font color="#FFAA00">audio</font> (<font
color="#CC0000">227423</font> → <font color="#00AA00">09c839</font>)<br/>- frames (794116)</div>"]
    style example_video stroke:#FFA500,stroke-width:3px
    example_crop["<div style="text-align:left"><b>example/crop</b><br/><font color="#CC0000">3ac04d</font> → <font
color="#00AA00">54dc7f</font><br/><font color="#999">---</font><br/>- <font color="#FFAA00">audio</font> (<font
color="#CC0000">76c8bd</font> → <font color="#00AA00">f3130c</font>)<br/>- frames (abc790)</div>"]
    style example_crop stroke:#FFA500,stroke-width:3px
    example_face_detection["<div style="text-align:left"><b>example/face_detection</b><br/>1ac83b<br/><font
color="#999">---</font><br/>- faces (2d75f0)</div>"]
    example_stt["<div style="text-align:left"><b>example/stt</b><br/><font color="#CC0000">c83a75</font> → <font
color="#00AA00">066d34</font><br/><font color="#999">---</font><br/>- <font color="#FFAA00">transcription</font> (<font
color="#CC0000">ac412b</font> → <font color="#00AA00">058410</font>)</div>"]
    style example_stt stroke:#FFA500,stroke-width:3px

    example_video --> example_crop
    example_crop --> example_face_detection
    example_video --> example_stt

The versions of audio fields through the graph as well as the whole FaceDetection feature stayed the same!

We can use Metaxy's static graph analysis to identify which features need to be recomputed when a new version of a feature is introduced. In addition to feature and field level versions, Metaxy can also compute a sample-level version (may be different for each sample in the one million dataset you have) ahead of computations through the whole graph. This enables exciting features such as processing cost prediction and automatic migrations for metadata.

Development

Setting up the environment:

uv sync --all-extras
uv run prek install

Examples

See examples.

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