🧬 methurator
🚀 What is methurator?
Note: For detailed documentation, command reference, and advanced usage, see the docs here.
methurator is a Python package to estimate CpG sequencing saturation for DNA methylation sequencing data.
✨ Key features
- Extrapolate CpG discovery beyond observed sequencing depth
- Compute theoretical asymptotes
- Optional bootstrap confidence intervals
- Interactive HTML plots
- BioConda and BioContainer support
📦 Installation
pip
pip install methurator
BioConda (recommended)
conda create -n methurator_env methurator
conda activate methurator_env
Container
docker pull quay.io/biocontainers/methurator
Example Workflow
# Run Chao estimator on BAM file
methurator gt-estimator --genome hg19 my_sample.bam --compute_ci
# Generate plots from the results
methurator plot --summary output/methurator_summary.yml
1 maintainer
Metadata
1 maintainer
Release files for methurator 2.2.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| methurator-2.2.0.tar.gz | 34.7 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| methurator-2.2.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 73.6 kB
Release files / methurator-2.2.0.tar.gz
| Download URL | methurator-2.2.0.tar.gz |
|---|---|
| Size | 34.7 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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| Download URL | methurator-2.2.0-py3-none-any.whl |
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| Size | 39.0 kB |
| Tags | Python 3 |
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Yes |
| Uploaded via |
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|
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