MethylVerse
Library to work with WGBS, EM-seq, and/or methylation array data in one interface.
For full usage and installation documentation
Install
If you dont already have numpy and scipy installed, it is best to download
Anaconda, a python distribution that has them included.
https://continuum.io/downloads
Dependencies can be installed by:
pip install -r requirements.txt
PyPI install, presuming you have all its requirements installed:
pip install methylverse
Quick start
Test numpy random integers:
import MethylVerse as mv
beta_values = mv.core.read_methylation("path/to/methylation")
Run the M-PACT classifier from the cammandline
python -m MethylVerse MPACT example.bedgraph --impute --regress --call_cnvs --verbose
1 maintainer
Metadata
1 maintainer
Release files for MethylVerseDash 1.1.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| methylversedash-1.1.1.tar.gz | 756.3 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| methylversedash-1.1.1-cp311-cp311-macosx_15_0_x86_64.whl | CPython 3.11 | CPython 3.11 | macOS 15.0+ x86-64 | Details |
Total release size: 1.5 MB
Release files / methylversedash-1.1.1.tar.gz
| Download URL | methylversedash-1.1.1.tar.gz |
|---|---|
| Size | 756.3 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.7.1 CPython/3.11.3 Darwin/24.4.0
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Release files / methylversedash-1.1.1-cp311-cp311-macosx_15_0_x86_64.whl
| Download URL | methylversedash-1.1.1-cp311-cp311-macosx_15_0_x86_64.whl |
|---|---|
| Size | 788.6 kB |
| Tags | CPython 3.11 macOS 15.0+ x86-64 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.7.1 CPython/3.11.3 Darwin/24.4.0
|
