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mfoutparser: efficient and convenient parsing of ModelFree output files.

Project description

mfoutparser by Arthur G. Palmer, III and Michelle L. Gill

A series of python subroutines to read and extract information from the STAR format mfout file generated by the program ModelFree.

Unlike the BMRB STAR format, the format used by ModelFree uses the data_name field, rather than the save_name field and also allows nested loops (the mfout file has loops nested to a depth of two only).

mfoutparser has been tested on python 2.7, 3.4, and 3.5. It requires the Numpy (tested on version 1.10.1) and Pandas (tested on version 0.17.1) libraries. IPython notebook (version >= 3.2.1) is required to run the demonstration notebook located in the examples directory. Matplotlib is required if plotting of the data is desired.

See the examples directory in the installation for a demonstration or run the following from the command line:

python -c ‘import mfoutparser as mf; mf.copy_examples()’

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