mfoutparser: efficient and convenient parsing of ModelFree output files.
mfoutparser by Arthur G. Palmer, III and Michelle L. Gill
A series of python subroutines to read and extract information from the STAR format mfout file generated by the program ModelFree.
Unlike the BMRB STAR format, the format used by ModelFree uses the data_name field, rather than the save_name field and also allows nested loops (the mfout file has loops nested to a depth of two only).
mfoutparser has been tested on python 2.7, 3.4, and 3.5. It requires the
Numpy (tested on version 1.10.1) and Pandas (tested on version 0.17.1)
libraries. IPython notebook (version >= 3.2.1) is required to run the
demonstration notebook located in the
examples directory. Matplotlib
is required if plotting of the data is desired.
examples directory in the installation for a demonstration or
run the following from the command line:
python -c ‘import mfoutparser as mf; mf.copy_examples()’