This is a pre-production deployment of Warehouse, however changes made here WILL affect the production instance of PyPI.
Latest Version Dependencies status unknown Test status unknown Test coverage unknown
Project Description

Overview

This software aims to be a reliable way to stitch your microscope images. To get good results, a couple of assumptions should be true about your dataset:

  • images are regular spaced
  • images are of same size
  • side by side images have translation only in one dimension
  • (if not, check your scanning mirror rotation)
  • scale in edge of images are constant

Installation

Install using pip

pip install microscopestitching

Example

from microscopestitching import stitch
from skimage.io import imsave

images = []
for i in range(50):
    row = i // 10
    col = i % 10
    images.append(('%d.png' % i, row, col))

merged = stitch(images)
imsave('merged.png', merged)

See also notebook examples.

API reference

API reference is at http://microscopestitching.rtfd.org.

Development

Install dependencies and link development version of microscopestitching to pip:

git clone https://github.com/arve0/microscopestitching
cd microscopestitching
pip install -r requirements.txt # install dependencies and microscopestitching-package

Testing

tox

Build documentation locally

To build the documentation:

pip install -r docs/requirements.txt
make docs
Release History

Release History

0.2.0

This version

History Node

TODO: Figure out how to actually get changelog content.

Changelog content for this version goes here.

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0.1.2

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0.1.1

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0.1.0

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0.0.1

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Download Files

Download Files

TODO: Brief introduction on what you do with files - including link to relevant help section.

File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
microscopestitching-0.2.0-py2.py3-none-any.whl (6.6 kB) Copy SHA256 Checksum SHA256 3.4 Wheel Jun 17, 2015
microscopestitching-0.2.0.tar.gz (4.1 MB) Copy SHA256 Checksum SHA256 Source Jun 17, 2015

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