MicroView
MicroView, a reporting tool for taxonomic classification
MicroView agreggates results from taxonomic classification tools, such as Kaiju and Kraken, building an interactive HTML report with insightful visualizations.
Checkout the full documentation.
Quickstart
Install the package:
pip install microview
Alternatively, you can also install it with Conda:
conda install bioconda:microview
Go to your directory containing Kaiju/Kraken-style results and run:
microview -t .
Alternatively, if you have a CSV table defining result paths and contrasts, like this:
sample,group
result_1.tsv,group_one
result_2.tsv,group_two
...etc...
You can run MicroView like this:
microview -df contrast_table.csv -o report_with_table.html
Then, an HTML file named microview_report.html -
or the name you defined with the -o param -
should be available in your working directory,
try opening it with your browser!
Example report
Here's what the beginning of a MicroView report looks like (sensitive information obscured):
1 maintainer
Metadata
1 maintainer
Release files for MicroView 0.11.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| MicroView-0.11.0.tar.gz | 1.1 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| MicroView-0.11.0-py2.py3-none-any.whl | Python 3, Python 2 | none | any | Details |
Total release size: 2.3 MB
Release files / MicroView-0.11.0.tar.gz
| Download URL | MicroView-0.11.0.tar.gz |
|---|---|
| Size | 1.1 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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|
|
BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/5.0.0 CPython/3.11.8
|
Release files / MicroView-0.11.0-py2.py3-none-any.whl
| Download URL | MicroView-0.11.0-py2.py3-none-any.whl |
|---|---|
| Size | 1.2 MB |
| Tags | Python 2 Python 3 |
|
SHA-256 checksum How to use checksums |
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|
|
BLAKE2b-256 checksum How to use checksums |
256759de8311b75aeade4c5934428d58aea4d749878e91b1266b9601f0510eb7
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/5.0.0 CPython/3.11.8
|
