Multi-objective GEMs metabolic interaction inference
Project description
MIMEco is python package that explores communities metabolic interactions using multi-objective linear programming on GEnome-scale Metabolic models (GEMs). This tool automates the inference of interaction type, interaction score and exchanged metablites between two models in a given condition.
Documentation
For detailed documentation, please go to readthedocs : mimeco
Installation
<Under developpment> This tool is destined to be available using pip.
Dependancies
To use MIMEco, you will need to download a solver, preferably CPLEX or gurobi. Both are free for academics.
<Dependancies that are in pip so juste to put in setup.py : mocbapy, pickle, warnings, pandas, sklearn, math>
Credits and License
<TODO>
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