minder.research-data-snapshots

Install

python -m pip install minder.research-data-snapshots

This will provide exports in Parquet format, which should be sufficient if you're using Pandas or another dataframe library.

If you require exports in CSV format then use:

python -m pip install 'minder.research-data-snapshots[csv]'

Use

First retrieve an access token from https://research.minder.care/

Then use one of the following methods to retrieve data snapshots

CLI

python -m minder.research_data_snapshots --dataset patients raw_heart_rate --organization SABP "H&F" --token-path /path/to/access/token

Run python -m minder.research_data_snapshots --help to see all options

Library

python -m pip install 'pandas[parquet]'

export RESEARCH_PORTAL_TOKEN_PATH=/path/to/access/token

from datetime import datetime

import pandas as pd

from minder.research_data_snapshots import download_datasets

patients = pd.concat(pd.read_parquet(dataset) for dataset in download_datasets(["patients"], ["SABP", "H&F"]))

raw_heart_rate = (
    pd.concat(
        pd.read_parquet(
            path,
            filters=[
                ("start_date", ">=", datetime.fromisoformat("2023-01-01T00Z")),
                ("start_date", "<", datetime.fromisoformat("2024-01-01T00Z")),
            ],
            columns=["patient_id", "start_date", "value"],
        )
        for path in download_datasets(["raw_heart_rate"], ["SABP", "H&F"])
    )
    .sort_values("start_date")
    .reset_index(drop=True)
)

Metadata

Release files for minder.research-data-snapshots 0.23.0

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for minder.research-data-snapshots 0.23.0
File	Size	Uploaded
minder_research_data_snapshots-0.23.0.tar.gz	4.9 kB	Apr 9, 2025	Details

Built distribution (wheel)

Table of built distributions (wheels) for minder.research-data-snapshots 0.23.0
File	Interpreter	ABI	Platform	Reset
minder_research_data_snapshots-0.23.0-py3-none-any.whl 4.8 kB Apr 9, 2025	Python 3	none	any	Details

Total release size: 9.8 kB

Release files / minder_research_data_snapshots-0.23.0.tar.gz

Download URL	minder_research_data_snapshots-0.23.0.tar.gz
Size	4.9 kB
Tags	Source
SHA-256 checksum How to use checksums	`9779dd7b20478c2edb6178b59d43558f9ded9c87aee4b621f88bbecde836bfa8`
BLAKE2b-256 checksum How to use checksums	`5b2571e2ccc2ac4bcaaa886000dbf7e1a2d0f1a07f1463613539b11fc55b03c6`
Upload date	Apr 9, 2025
Uploaded using Trusted Publishing? What is trusted publishing?	Yes
Uploaded via	`twine/6.1.0 CPython/3.12.9`

Release files / minder_research_data_snapshots-0.23.0-py3-none-any.whl

Download URL	minder_research_data_snapshots-0.23.0-py3-none-any.whl
Size	4.8 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`b42d35d5ec0acd795bbaac344a436849e49cc670267e1d7c8cca7b1338bf3593`
BLAKE2b-256 checksum How to use checksums	`8a23da7c091f45e81f2a2d1c832121f0d79771ed0271513190bca30efe9dbdf1`
Upload date	Apr 9, 2025
Uploaded using Trusted Publishing? What is trusted publishing?	Yes
Uploaded via	`twine/6.1.0 CPython/3.12.9`