Installing
pip3 install miqatools --upgradeUsage
Multi-sample Test Execution
from miqatools.remoteexecution.triggertestandupload_python import trigger_test_and_upload_by_dsid
from miqatools.remoteexecution.triggertest_helpers import get_trigger_info
server_url = "YOURCO.miqa.io"
trigger_id = "YOUR_TRIGGER_ID"
api_key = "YOUR_API_KEY"
# First create the lookup of test result file locations for each dataset:
ds_id_mapping = get_trigger_info(server_url, trigger_id, api_key=api_key).get("ds_id_mapping", {}).get("results",{}).get("data",{})
locations_lookup_by_dsid = {ds_id_mapping.get(k):v for k,v in locations_lookup_by_samplename.items()}
# Use the dataset location lookup and trigger info to kick off "execution" of the trigger, uploading the outputs
run_id = trigger_test_and_upload_by_dsid(server_url, trigger_id, "YOUR_VERSION_NAME", locations_lookup_by_dsid, filepatterns=["*.vcf"], api_key=api_key)Create and Tag Stand-In Datasets
from miqatools.datamanagement.datasethelpers import batch_create_datasets_and_tag_or_group
server_url = "YOURCO.miqa.io"
trigger_id = "YOUR_TRIGGER_ID"
api_key = "YOUR_API_KEY"
batch_create_datasets_and_tag_or_group(server_url, 1, 1, ["Sample1","Sample2"], ["BATCH_1","another_tag"], "BATCH_1", api_key=api_key)1 maintainer
Release files for miqatools 2.0.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| miqatools-2.0.0.tar.gz | 47.1 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| miqatools-2.0.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 84.3 kB
Release files / miqatools-2.0.0.tar.gz
| Download URL | miqatools-2.0.0.tar.gz |
|---|---|
| Size | 47.1 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
c97fe97d1af0b147dbf1b1ed50b67da042f55ba6c690e32e25e134691a91dd25
|
|
BLAKE2b-256 checksum How to use checksums |
1c4c912b9543569214b2617c110fbe90c76bb2358575f82f3c14621f23d23a62
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/7.0.0 CPython/3.11.16
|
Release files / miqatools-2.0.0-py3-none-any.whl
| Download URL | miqatools-2.0.0-py3-none-any.whl |
|---|---|
| Size | 37.2 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
b5c44ad8fd96ee7299a10ac3ce57cce72b4c6ff48ec67b4ba189ac68fcc3a565
|
|
BLAKE2b-256 checksum How to use checksums |
965da63ab353e9bceed40f8f92ea56a2fd4a434602241b4684e912b78f36ed78
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/7.0.0 CPython/3.11.16
|
