mirdip-client 0.1.0

Typed Python client and CLI for mirDIP HTTP API

mirdip-client

Typed Python client and CLI for the mirDIP HTTP API.

Install

pip install .

Usage (Python)

from mirdip_client import MirDIPClient

client = MirDIPClient()
resp = client.search_genes("AKAP17A,AKR1C2,APP,ZZZ3,MARK4,C17orf51", "Very High")
print(resp.results_size)
print(resp.results)  # Tab-delimited

Pandas helper

The results field is a tab-delimited string. To convert to a DataFrame:

import pandas as pd
from io import StringIO

# results contains header row followed by rows
df = pd.read_csv(StringIO(resp.results), sep="\t")

CLI

mirdip genes "AKAP17A,AKR1C2" "Very High"
mirdip micrornas "hsa-miR-603,hsa-let-7a-3p" "High"
mirdip bidirectional "AKAP17A,APP" "hsa-miR-603" "Medium" "TargetScan_v7_2" 2

Notes

• Base URL defaults to http://ophid.utoronto.ca/mirDIP.
• Score classes: Very High, High, Medium, Low.
• Responses include raw text and parsed fields.

Contributing

See CONTRIBUTING.md for development and release instructions.