miRge3.0
An update to Python package to perform comprehensive analysis of small RNA sequencing data, including miRNA annotation, A-to-I editing, novel miRNA detection, isomiR analysis, visualization through IGV, processing Unique Molecular Identifieres (UMI), tRF detection and producing interactive graphical output.
miRge3.0 is developed in python v3.8 and is a recent update of our previous version miRge2.0. This build includes command line interface (CLI) and cross-platform Graphical User Interface (GUI). For more details refer to documentation link below.
Links
Citation
Arun H Patil, Marc K Halushka. miRge3.0: a comprehensive microRNA and tRF sequencing analysis pipeline. NAR Genomics and Bioinformatics. 2021.
1 maintainer
Metadata
1 maintainer
Release files for mirge3 0.1.4
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| mirge3-0.1.4.tar.gz | 2.8 MB | Without provenance | Details for mirge3-0.1.4.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| mirge3-0.1.4-py3-none-any.whl | Python 3 | none | any | Details for mirge3-0.1.4-py3-none-any.whl |
Total release size: 5.6 MB
Release files / mirge3-0.1.4.tar.gz
| Download URL | mirge3-0.1.4.tar.gz |
|---|---|
| Size | 2.8 MB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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twine/3.1.1 pkginfo/1.5.0.1 requests/2.26.0 setuptools/65.5.1 requests-toolbelt/0.9.1 tqdm/4.19.6 CPython/3.8.14
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Release files / mirge3-0.1.4-py3-none-any.whl
| Download URL | mirge3-0.1.4-py3-none-any.whl |
|---|---|
| Size | 2.8 MB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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twine/3.1.1 pkginfo/1.5.0.1 requests/2.26.0 setuptools/65.5.1 requests-toolbelt/0.9.1 tqdm/4.19.6 CPython/3.8.14
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Security for mirge3 0.1.4
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