MkDocs theme designed for Bioinformatic Unit of the Istituto Zooprofilattico dell' Abruzzo e del Molise G. Caporale

These details have not been verified by PyPI

Project description

mkdocs-bioinformatic-izsam-theme

This is an MkDocs theme designed to layout the documentation provided by Bioinformatic Unit of the Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale".

Important!

The theme is intended to work with the plugin mkdocs-izsam-search https://pypi.org/project/mkdocs-izsam-search/

pip install mkdocs-izsam-search

Theme customization

The theme allows you to customize platform title and footer contents by using your mdkdocs configuration file mkdocs.yml.

extra:
  platform_title: Piattaforma GenPat, Wiki
  language: it
  useful_links:
    link_1:
      label: CRN Sequenze Genomiche
      url: https://www.izs.it/IZS/Eccellenza/Centri_nazionali/CRN_-_Sequenze_Genomiche
    link_2:
      label: IZSAM "G. Caporale"
      url: https://www.izs.it
  support:
    support_1:
      label: bioinformatica@izs.it
      url: mailto:bioinformatica@izs.it
    support_2:
      label: +39 0861 3321
      url: tel:+3908613321
  tools:
    tool_1:
      icon: tabler-print
      label: Versione PDF
      target: _blank
      url: https://genpat.izs.it/genpat_wiki/en/pdf/genpat_platform_wiki.pdf
  copyright: IZSAM "G. Caporale"

Multi language support

The theme supports a localization system written in javascript. At the moment it supports Italian and English but it is possible to add new languages.

Add a language

Create a new language file in js/i18n folder by using en.js or it.js as template and translate values.
List it in js/languages-builder.js
Pack language files in languages.js

Pack language files

To pack files we use packjs npm library:

npm install --save-dev packjs

Then from js folder:

  packjs i18n/languages-builder.js languages.js

The code will loop through the wiki.languages object keys and for each key, it will add an option to the language switcher. By selecting an available language, the code will redirect to the language subfolder.

The theme is designed to handle different builds for each language. Specifically, we will have the documentation in Italian hosted under https://mywiki.eu/it, the documentation in English under https://mywiki.eu/en, and so on.

Please note: If you have a single language site, just remove the languages you don't need from js/languages.js. If you want to modify the behavior of the language switcher, you can override the js/locales.js file.

Language definition

Each build relies on config.extra.language parameter to define the wiki language (the default is en), on base.html we set the html lang attribute and a global javascript constant config_lang with that value:

<html lang="{{ config.extra.language|default('en') }}">

const config_lang = "{{ config.extra.language|default('en') }}";

The config.extra.language variable is used also to set search functionalities. There are some limitations on the values it can assume. Allowed languages are: ar, da, de, du, es, fi, fr, hi, hu, it, ja, jp, nl, no, pt, ro, ru, sv, ta, th, tr, vi, zh. If you want to use a different language, you should not to use mkdocs-izsam-search plugin and customize the base.html file removing all the code related to it.

{% if config.extra.language and not 'en' in config.extra.language %}
  <script src="{{ 'js/lunr-languages/lunr.stemmer.support.js'|url }}"></script>
  <script src="{{ 'js/lunr-languages/lunr.multi.js'|url }}"></script>
  {% set js_path = 'js/lunr-languages/lunr.' ~ config.extra.language ~ '.js' %}
  <script src="{{ js_path|url }}"></script>
{% endif %}

Theme features

Use image caption

If you need to use a caption for images, you can use the markdown image title sintax.

![](image.png "image title")

A function in theme.js loops all images and if a title exists will append a figcaption tag after the image.

Use icons inline

To use icons inline inside the contents, please add the alt attribute inline-icon:

![inline-icon](icon.png)

Images will have inherent size and displayed inline.

Use diagram as images (no plantuml)

To use diagram inside the contents as images, please add the alt attribute diagram to avoid box shadow.

![diagram](file.png)

Credits

For the icons, we are using the free Tabler package, converted to a font with the IcoMoon app.

Change log

[1.0.15] - 2026-05-27

Icons migration

Migrated theme icons from Iconic to Tabler in templates, JavaScript, and CSS.
Updated CSS pseudo-element codepoints from Iconic glyphs to Tabler glyphs where icons are rendered via content.
Removed legacy Iconic assets from package:
- deleted bioinformatic_izsam_theme/css/iconic.css
- deleted bioinformatic_izsam_theme/fonts/iconic/
Updated tools icon example in README from iconic-print to tabler-print.

[1.0.14] - 2026-03-06

i18n

Added support for the French language.

[1.0.13] - 2025-11-05

base.css

Added specific rules for ordered lists.

[1.0.12] - 2025-09-29

wiki.css

Added max-height css rule for inline icons.

[1.0.11] - 2025-09-08

search.js

Added support for the new meta_text field introduced by mkdocs-izsam-search==0.1.9.
Implemented a check to display the searched text highlighted with the <mark> tag in the summary.

setup.py

Fixed a typo in the package name: changed name='mkdocs-bionformatic-izsam-theme' to name='mkdocs-bioinformatic-izsam-theme'.

[1.0.10] - 2025-05-28

404 page

Fixed HTML, changed contents and messages, new css rules.

[1.0.9] - 2025-05-22

Hyphenation

Added hyphenation and break-word rules for navigation, toc, contents and titles.

[1.0.8] - 2025-05-20

Bug fixes for navigation menu

Fixed JavaScript DOM selector error.
Minor changes to submenu icon positions.

[1.0.7] - 2025-05-20

Bug fixes and accessibility improvements

Updated UX/UI for navigation and TOC menu.
Minor fixes for mobile display.

[1.0.6] - 2025-03-7

Bug fixes and improvements

Improved handling of title and meta description, now they take values from the metadata inserted in the markdown of the docs.
Fixed behavior that did not allow independent clicking on the plus and minus icons in the context menu.
Added language code to the options of the language switch select box.

[1.0.5] - 2025-02-25

Added rules for drawio diagrams

Added css rules to manage images with class="drawio".

[1.0.4] - 2025-02-04

Fix for TOC navigation

Fix for TOC navigation expandable functionalities if they contain children.

[1.0.3] - 2025-01-31

UX changes and a fix for English UI translation

TOC navigation now has expandable items if they contain children. Scrolling the page will highlight the corresponding TOC item in the context menu. Fixed an incorrect translation for the search key in the i18n English object.

[1.0.2] - 2025-01-31

Bug fixes

Fix for onload events being called twice for the same element. Fix for TOC navigation theme where the for loop was generating a ul tag for each element.

[1.0.1] - 2025-01-30

Bug fix and cleaning

Fixed formatting problem with last update date on footer, reoved unused code

[1.0.0] - 2025-01-28

Refactoring

Theme code refactoring in order to have greater modularity for overrides, better localization management, and improved flexibility with the use of extra mkdocs configuration variables.

[0.2.8] - 2024-09-17

Added css style in order to manage Mermaid diagrams

Added support in general theme css rules for Mermaid diagrams generated by mkdocs-izsam-mermaid-to-images plugin

[0.2.7] - 2024-09-16

Added home link for header logo

[0.2.6] - 2024-09-10

Fixed style for indented list

[0.2.5] - 2024-06-17

Fixed package problem related to build process

[0.2.4] - 2024-06-17

New style for table

[0.2.3] - 2023-12-1

Added new logo and canged accent color

[0.2.1] - 2023-08-29

Small fix related to 0.2 release

Edited base.html

[0.2] - 2023-08-29

Refactoring and bug fix for search

Change in multilingual handling for search in order to resolve issues related to searching for words containing the underscore character (_).

Edited base.html
Edited js/search.js

[0.1.9.3] - 2023-05-15

Ux improvement for main menu in mobile view

Edited theme.css
Edited base.html

[0.1.9.2] - 2023-03-28

Bug fix for ordered list

Edited theme.css

[0.1.9.1] - 2022-12-09

Ux improvement for main menu in mobile view

Edited theme.css

[0.1.9] - 2022-10-24

Small fix on Ux improvement for main menu in mobile view

Edited theme.css and base.html

[0.1.8] - 2022-10-24

Ux improvement for main menu in mobile view

Edited theme.css and base.html

[0.1.7] - 2022-05-12

Debug and refactoring for theme.js

Edited theme.js

[0.1.6] - 2022-05-12

Fix for image caption function

Edited theme.css and theme.js

[0.1.5] - 2022-05-12

Added support for image caption

Edited theme.css and theme.js

Readme improvements

Edited README.md

[0.1.4] - 2022-05-2

CSS: added rule for html video tag

Edited theme.css

[0.1.3] - 2022-04-27

Html base template: changed next and previous buttons in order to integrate parent title

Edited base.html

[0.1.2] - 2022-03-18

Layout improvement.

Edited theme.css

[0.1.1] - 2022-01-25

Layout improvement.

Edited theme.css

[0.1.0] - 2022-01-25

Layout improvement.

Edited theme.css

[0.0.9] - 2022-01-25

Layout changes: form fields and buttons aspect.

Edited theme.css

[0.0.8] - 2021-11-24

Layout improvement.

Edited theme.css

[0.0.7] - 2021-11-15

Project description.

Edited README.md

[0.0.6] - 2021-11-15

Theme localization, integration of a footer.css, ui emprovement.

Added theme localization for search.html file.
Added theme localization for 404.html file.
Added a footer.css file.
Small changes in the main theme.css style for left menu.

[0.0.5] - 2021-11-12

Theme localization

The theme now support it and en localization and it can be extended with other langauges.

[0.0.4] - 2021-11-12

Added support for other languages besides `en` to make theme working with mkdocs-izsam-search plugin

The theme now support languages present in js/lunr-languages and can be defined in theme.locale of the .yml configuration file. Multilanguage is not supported yet.

[0.0.2] and [0.0.3] - 2021-11-11

Debug on setup

Fixed bugs for the mkdocs entry point in setup.py

[0.0.1] - 2021-11-11

First release

Made stuff necessary to package a theme

Project details

These details have not been verified by PyPI

Release history Release notifications | RSS feed

This version

1.0.15

May 27, 2026

1.0.14

Mar 6, 2026

1.0.13

Nov 5, 2025

1.0.12

Sep 29, 2025

1.0.11

Sep 8, 2025

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mkdocs-bioinformatic-izsam-theme 1.0.15

Navigation

Verified details

Maintainers

Unverified details

Meta

Project description

mkdocs-bioinformatic-izsam-theme

Important!

Theme customization

Multi language support

Add a language

Pack language files

Language definition

Theme features

Use image caption

Use icons inline

Use diagram as images (no plantuml)

Credits

Change log

[1.0.15] - 2026-05-27

Icons migration

[1.0.14] - 2026-03-06

i18n

[1.0.13] - 2025-11-05

base.css

[1.0.12] - 2025-09-29

wiki.css

[1.0.11] - 2025-09-08

search.js

setup.py

[1.0.10] - 2025-05-28

404 page

[1.0.9] - 2025-05-22

Hyphenation

[1.0.8] - 2025-05-20

Bug fixes for navigation menu

[1.0.7] - 2025-05-20

Bug fixes and accessibility improvements

[1.0.6] - 2025-03-7

Bug fixes and improvements

[1.0.5] - 2025-02-25

Added rules for drawio diagrams

[1.0.4] - 2025-02-04

Fix for TOC navigation

[1.0.3] - 2025-01-31

UX changes and a fix for English UI translation

[1.0.2] - 2025-01-31

Bug fixes

[1.0.1] - 2025-01-30

Bug fix and cleaning

[1.0.0] - 2025-01-28

Refactoring

[0.2.8] - 2024-09-17

Added css style in order to manage Mermaid diagrams

[0.2.7] - 2024-09-16

Added home link for header logo

[0.2.6] - 2024-09-10

Fixed style for indented list

[0.2.5] - 2024-06-17

Fixed package problem related to build process

[0.2.4] - 2024-06-17

New style for table

[0.2.3] - 2023-12-1

Added new logo and canged accent color

[0.2.1] - 2023-08-29

Small fix related to 0.2 release

[0.2] - 2023-08-29

Refactoring and bug fix for search

[0.1.9.3] - 2023-05-15

Ux improvement for main menu in mobile view

[0.1.9.2] - 2023-03-28

Bug fix for ordered list

[0.1.9.1] - 2022-12-09

Ux improvement for main menu in mobile view

[0.1.9] - 2022-10-24

Small fix on Ux improvement for main menu in mobile view

[0.1.8] - 2022-10-24

Ux improvement for main menu in mobile view

[0.1.7] - 2022-05-12

Added support for other languages besides `en` to make theme working with mkdocs-izsam-search plugin