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A Python Package for Quantification


mlquantify is a Python library for quantification, also known as supervised prevalence estimation, designed to estimate the distribution of classes within datasets. It offers a range of tools for various quantification methods, model selection tailored for quantification tasks, evaluation metrics, and protocols to assess quantification performance. Additionally, mlquantify includes calibration tools, confidence region estimation, pluggable solvers and representations, and visualization utilities to help analyze and interpret results.

Website: https://luizfernandolj.github.io/mlquantify/


Installation

To install mlquantify, run the following command:

pip install mlquantify

If you only want to update, run the code below:

pip install --upgrade mlquantify

Contents

Section Description
33 Quantification Methods Counting (CC, PCC, ACC, TAC, TX, TMAX, T50, MS, MS2, FM, GACC, GPACC), Matching (DyS, HDy, HDx, SORD, SMM, MMD_RKHS, KDEyML, KDEyHD, KDEyCS, GHDy, GHDx, GKDEyML, EDy, EDx), Likelihood (EMQ, CDE, MLPE), Neighbors (PWK), Meta (EnsembleQ, AggregativeBootstrap, QuaDapt).
Dynamic class management All methods are dynamic, and handle multiclass and binary problems; in the binary case, One-Vs-All (OVA) is applied automatically.
Solvers Modular optimization backends: BinarySolver, LeastSquaresSolver, SimplexSolver.
Representations Pluggable feature representations: HistogramRepresentation, KDERepresentation, DistanceRepresentation, KernelMeanRepresentation, PredictionRepresentation.
Losses Composable loss functions (distance-based and likelihood-based) shared across quantifier families.
Calibration ClassifierCalibrator and QuantifierCalibrator for post-hoc calibration of classifiers and quantifiers.
Confidence Regions ConfidenceInterval, ConfidenceEllipseSimplex, ConfidenceEllipseCLR for uncertainty estimation on prevalence predictions.
Model Selection GridSearchQ and evaluation protocols (APP, NPP, UPP, PPP) tailored for quantification tasks.
Evaluation Metrics Metrics for quantification performance: AE, MAE, NAE, SE, MSE, KLD, RAE, NRAE, NKLD, NMD, RNOD, VSE, CvM_L1.
Visualization scikit-learn-style Display classes for both single- and multiple-sample results: DiagonalDisplay, BiasDisplay, ErrorByShiftDisplay, PrevalenceDisplay, ConfidenceRegionDisplay.
Comprehensive Documentation Full API reference and user guide covering all modules and methods.

Quick example:

This snippet builds a synthetic 3-class dataset that combines prior and covariate shift with make_quantification, then evaluates a quantifier across the Artificial Prevalence Protocol (APP) with apply_protocol — which trains the model on a held-out split and scores it on many test samples drawn at controlled prevalences.

import numpy as np
from sklearn.ensemble import RandomForestClassifier

from mlquantify.datasets import make_quantification
from mlquantify.model_selection import apply_protocol
from mlquantify.counting import ACC

# Synthetic 3-class data with a complex (stacked prior + covariate) shift
Xs, ys, _ = make_quantification(
    n_classes=5,
    shift_type=["prior", "covariate"],   # compose two kinds of dataset shift
    covariate_scale=1.0,
    random_state=0,
)
X, y = np.concatenate(Xs), np.concatenate(ys)   # pool the bags into one dataset

# Evaluate ACC under the Artificial Prevalence Protocol. apply_protocol fits the
# quantifier on a train split and scores it on many held-out test samples drawn
# at controlled prevalences (the test instances never overlap with training).
results = apply_protocol(
    ACC(RandomForestClassifier(random_state=0)), X, y,
    protocol="app", batch_size=[100, 500], scoring=["mae", "rae"], random_state=0, verbose=1
)

print(f"APP over {results['n_batches']} test samples")
print(f"  mean MAE -> {results['MAE'].mean():.4f}")
print(f"  mean RAE -> {results['RAE'].mean():.4f}")

Requirements

Core dependencies (installed automatically with pip install mlquantify):

  • scikit-learn
  • numpy
  • scipy
  • pandas
  • joblib
  • tqdm

Optional extras:

  • pip install mlquantify[viz] — plotting via mlquantify.visualization (adds matplotlib)
  • pip install mlquantify[neural] — neural quantifiers such as QuaNet (adds PyTorch)
  • pip install mlquantify[all] — everything above

Metadata

Release files for mlquantify 0.5.1

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

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mlquantify-0.5.1-cp313-cp313-win_amd64.whl CPython 3.13 CPython 3.13 Windows x86-64 Details
mlquantify-0.5.1-cp313-cp313-win32.whl CPython 3.13 CPython 3.13 Windows x86-32 Details
mlquantify-0.5.1-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl CPython 3.13 CPython 3.13 Linux glibc 2.17+ x86-64 Details
mlquantify-0.5.1-cp313-cp313-macosx_11_0_arm64.whl CPython 3.13 CPython 3.13 macOS 11.0+ ARM64 Details
mlquantify-0.5.1-cp313-cp313-macosx_10_13_x86_64.whl CPython 3.13 CPython 3.13 macOS 10.13+ x86-64 Details
mlquantify-0.5.1-cp312-cp312-win_amd64.whl CPython 3.12 CPython 3.12 Windows x86-64 Details
mlquantify-0.5.1-cp312-cp312-win32.whl CPython 3.12 CPython 3.12 Windows x86-32 Details
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mlquantify-0.5.1-cp312-cp312-macosx_11_0_arm64.whl CPython 3.12 CPython 3.12 macOS 11.0+ ARM64 Details
mlquantify-0.5.1-cp312-cp312-macosx_10_13_x86_64.whl CPython 3.12 CPython 3.12 macOS 10.13+ x86-64 Details
mlquantify-0.5.1-cp311-cp311-win_amd64.whl CPython 3.11 CPython 3.11 Windows x86-64 Details
mlquantify-0.5.1-cp311-cp311-win32.whl CPython 3.11 CPython 3.11 Windows x86-32 Details
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mlquantify-0.5.1-cp311-cp311-macosx_11_0_arm64.whl CPython 3.11 CPython 3.11 macOS 11.0+ ARM64 Details
mlquantify-0.5.1-cp311-cp311-macosx_10_9_x86_64.whl CPython 3.11 CPython 3.11 macOS 10.9+ x86-64 Details
mlquantify-0.5.1-cp310-cp310-win_amd64.whl CPython 3.10 CPython 3.10 Windows x86-64 Details
mlquantify-0.5.1-cp310-cp310-win32.whl CPython 3.10 CPython 3.10 Windows x86-32 Details
mlquantify-0.5.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl CPython 3.10 CPython 3.10 Linux glibc 2.17+ x86-64 Details
mlquantify-0.5.1-cp310-cp310-macosx_11_0_arm64.whl CPython 3.10 CPython 3.10 macOS 11.0+ ARM64 Details
mlquantify-0.5.1-cp310-cp310-macosx_10_9_x86_64.whl CPython 3.10 CPython 3.10 macOS 10.9+ x86-64 Details
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mlquantify-0.5.1-cp39-cp39-win32.whl CPython 3.9 CPython 3.9 Windows x86-32 Details
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mlquantify-0.5.1-cp39-cp39-macosx_10_9_x86_64.whl CPython 3.9 CPython 3.9 macOS 10.9+ x86-64 Details

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Release files / mlquantify-0.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

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This release

0.5.1 This release

26 release files

0.5.0

26 release files

0.4.1

26 release files

0.3.1

2 release files

0.3.0

2 release files

0.2.1

2 release files

0.2.0

2 release files

0.1.20

2 release files

0.1.19

2 release files

0.1.11

2 release files

0.1.10

2 release files

0.1.9

2 release files

0.1.8

2 release files

0.1.7

2 release files

0.1.6

2 release files

0.1.5

2 release files

0.1.4

2 release files

0.1.3

2 release files

0.1.2

2 release files

0.1.1

2 release files

0.1.0

2 release files

0.0.11

2 release files

0.0.1

2 release files

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