Program for estimating amino acid replacement rates
Project description
Usage: modelestimator <format> <options> infiles
<format> should be either FASTA, STOCKHOLM or PHYLIP
Output is a rate matrix and residue distribution vector.
Options:
-threshold or -t <f>
Stop when consecutive iterations do not change by more than <f>. Default is 0.001.
-bootstrap or -b <r>
Perform bootstrapping on multialignment with <r> resamplings. Only one infile should be given in this mode. Returns bootstrap norm.
Example usage:
modelestimator fasta -t 0.001 file1.fa file2.fa file3.fa
modelestimator fasta -b 200 file.fa
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
File details
Details for the file modelestimator_v2-0.0.1.tar.gz.
File metadata
- Download URL: modelestimator_v2-0.0.1.tar.gz
- Upload date:
- Size: 9.8 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/1.11.0 pkginfo/1.4.2 requests/2.19.1 setuptools/39.0.1 requests-toolbelt/0.8.0 tqdm/4.26.0 CPython/3.7.0
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
4dd8c7d67ad58dc8b2c311154ea82196d2d4d0d1d1c042325eb4829d6a13d616
|
|
| MD5 |
541b79b7b59d6ca92e89efd9dc2bf964
|
|
| BLAKE2b-256 |
e6d5207c1a782db051a75758a2aee1b02852573ba2fdb6013e0d07b96342cd8f
|
