Skip to main content

Program for estimating amino acid replacement rates

Project description

Usage: modelestimator <format> <options> infiles

<format> should be either FASTA, STOCKHOLM or PHYLIP
Output is a rate matrix and residue distribution vector.

-threshold or -t <f>
Stop when consecutive iterations do not change by more than <f>. Default is 0.001.
-bootstrap or -b <r>
Perform bootstrapping on multialignment with <r> resamplings. Only one infile should be given in this mode. Returns bootstrap norm.

Example usage:
modelestimator fasta -t 0.001 file1.fa file2.fa file3.fa
modelestimator fasta -b 200 file.fa

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for modelestimator-v2, version 0.0.1
Filename, size File type Python version Upload date Hashes
Filename, size modelestimator_v2-0.0.1.tar.gz (9.8 kB) File type Source Python version None Upload date Hashes View hashes

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page