Skip to main content

ModiFinder package

Project description

Welcome to ModiFinder's documentation!

ModiFinder is a tool for site localization of structural modifications using MS/MS data.

This project is under active development.

The documentation is available at: https://wang-bioinformatics-lab.github.io/ModiFinder_base/

Citing

ModiFinder: Tandem Mass Spectral Alignment Enables Structural Modification Site Localization

Mohammad Reza Zare Shahneh, Michael Strobel, Giovanni Andrea Vitale, Christian Geibel, Yasin El Abiead, Neha Garg, Berenike Wagner, Karl Forchhammer, Allegra Aron, Vanessa V Phelan, Daniel Petras, and Mingxun Wang

Journal of the American Society for Mass Spectrometry 2024 35 (11), 2564-2578

DOI: 10.1021/jasms.4c00061

License

Academic Software License: © 2024 UCR (“Institution”). Academic or nonprofit researchers are permitted to use this Software (as defined below) subject to Paragraphs 1-4:

1. Institution hereby grants to you free of charge, so long as you are an academic or nonprofit researcher, a nonexclusive license under Institution’s copyright ownership interest in this software and any derivative works made by you thereof (collectively, the “Software”) to use, copy, and make derivative works of the Software solely for educational or academic research purposes, and to distribute such Software free of charge to other academic or nonprofit researchers for their educational or academic research purposes, in all cases subject to the terms of this Academic Software License. Except as granted herein, all rights are reserved by Institution, including the right to pursue patent protection of the Software.
2. Any distribution of copies of this Software -- including any derivative works made by you thereof -- must include a copy (including the copyright notice above), and be made subject to the terms, of this Academic Software License; failure by you to adhere to the requirements in Paragraphs 1 and 2 will result in immediate termination of the license granted to you pursuant to this Academic Software License effective as of the date you first used the Software.
3. IN NO EVENT WILL INSTITUTION BE LIABLE TO ANY ENTITY OR PERSON FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF THE USE OF THIS SOFTWARE, EVEN IF INSTITUTION HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. INSTITUTION SPECIFICALLY DISCLAIMS ANY AND ALL WARRANTIES, EXPRESS AND IMPLIED, INCLUDING, BUT NOT LIMITED TO, ANY IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE SOFTWARE IS PROVIDED “AS IS.” INSTITUTION HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS OF THIS SOFTWARE.
4. Any academic or scholarly publication arising from the use of this Software or any derivative works thereof will include the following acknowledgment:  The Software used in this research was created by [INSERT AUTHOR NAMES] of UC Riverside. © 2024 UCR.

Commercial entities: please contact mingxun.wang@cs.ucr.edu or tp@ucr.edu for licensing opportunities.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

modifinder-1.4.2b0.tar.gz (55.1 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

modifinder-1.4.2b0-py3-none-any.whl (66.1 kB view details)

Uploaded Python 3

File details

Details for the file modifinder-1.4.2b0.tar.gz.

File metadata

  • Download URL: modifinder-1.4.2b0.tar.gz
  • Upload date:
  • Size: 55.1 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/6.0.1 CPython/3.12.8

File hashes

Hashes for modifinder-1.4.2b0.tar.gz
Algorithm Hash digest
SHA256 4e94c7604ace4a92e234c33cfd0041508ef13fc6295d7b9471b2790ef64f2f94
MD5 4d6be7c8f03a203a2171d949e2aa7541
BLAKE2b-256 ff45069cc4598ae22522f4dac27dbb61ddadad0739748c2edbfc272c525a5c9f

See more details on using hashes here.

Provenance

The following attestation bundles were made for modifinder-1.4.2b0.tar.gz:

Publisher: pypi_publish.yml on Wang-Bioinformatics-Lab/ModiFinder_base

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

File details

Details for the file modifinder-1.4.2b0-py3-none-any.whl.

File metadata

  • Download URL: modifinder-1.4.2b0-py3-none-any.whl
  • Upload date:
  • Size: 66.1 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/6.0.1 CPython/3.12.8

File hashes

Hashes for modifinder-1.4.2b0-py3-none-any.whl
Algorithm Hash digest
SHA256 351e63ea0230bfd28cedf3d975d98dcab6ede3d95e15177e90dc031f35aec174
MD5 f16dfa87ef49c169bc110754f7bf2c70
BLAKE2b-256 9e575010e0411fb49b7e8ad5ca745923faaf268cacc8426669d4993bd87b82eb

See more details on using hashes here.

Provenance

The following attestation bundles were made for modifinder-1.4.2b0-py3-none-any.whl:

Publisher: pypi_publish.yml on Wang-Bioinformatics-Lab/ModiFinder_base

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page