Module qc analysis tools
Project description
module-qc-analysis-tools v2.2.4
A general python tool for running ITkPixV1.1 module QC test analysis. An overview of the steps in the module QC procedure is documented in the Electrical specification and QC procedures for ITkPixV1.1 modules document and in this spreadsheet. The analysis scripts in this repository require input files with measurement data. The measurement data should be collected using the module-qc-measurement-tools package.
Table of contents
Requirements
This tool requires users to have >python3.6 with the following packages installed:
numpyscipytabulatematplotlibjsonschema
Installation
This package may be accessed by cloning from gitlab or by installing it via pip.
via clone
Use this method if you want to use the latest version of the package from gitlab. First clone the project:
git clone https://gitlab.cern.ch/atlas-itk/pixel/module/module-qc-analysis-tools.git
Upon a successful checkout, cd to the new module-qc-analysis-tools directory
and run the following to install the necessary software:
$ python3 -m venv env
$ source env/bin/activate
$ python -m pip install --upgrade pip
$ python -m pip install -e .
via pip
Use this method if you want to use the latest stable (versioned) release of the package.
$ python -m venv venv
$ source venv/bin/activate
$ python -m pip install -U pip
$ python -m pip install -U pip module-qc-analysis-tools==2.2.4
Note that users should use the latest python version (check python version via
python3 -V). Python3.7 is the minimum requirement for developers. See
For Developer section.
Scripts
Sensor IV Measurement
This analysis script analyses sensor leakage current vs voltage measurement. It produces an output file with several key parameters: breakdown voltage, leakage current at operation voltage (depletion voltage + 20/50V for 3D/planar sensor), whether breakdown was observed and the absolute maximum measured bias voltage. Note that raw measurement data will be plotted and uploaded onto the production database, which uses the absolute bias voltage and leakage current regardless of the polarity. All currents will be converted to uA.
If the depletion voltage if the sensor is unknown, please do not supply anything
to --vdepl. In this case either a value from the database or a default value
will be used.
One analysis criterion is the change wrt the bare module stage. For this, an additional input file is required which provides the reference bare module IV with up to 3 bare modules (triplets) in the format below. This is generated in localDB. If none is supplied, the analysis will run but the module will not pass.
Bare Module IV format
``` { 'target_component' : , 'target_stage' : , 'reference_IVs' : [ { 'component' : , 'stage' : , 'Vbd' : , 'Vfd' : , 'temperature' : , 'IV_ARRAY' : { "voltage" : [ array ], "current" : [array], "temperature": [array] } }, { 'component' : , 'stage' : , 'Vbd' : , 'Vfd' : , 'temperature' : , 'IV_ARRAY' : { "voltage" : [ array ], "current" : [array], "temperature": [array] } }, { 'component' : , 'stage' : , 'Vbd' : , 'Vfd' : , 'temperature' : , 'IV_ARRAY' : { "time": [array], "voltage" : [ array ], "current" : [array], "sigma current": [array], "temperature": [array], "humidity": [array] } } ] } ```analysis-IV-MEASURE --help
$ analysis-IV-MEASURE -h
Usage: analysis-IV-MEASURE [OPTIONS]
Options:
-i, --input-meas PATH path to the input measurement file or directory containing input measurement files. [default: None] [required]
-o, --output-dir PATH output directory [default: outputs]
-q, --qc-criteria PATH path to reference IV measurement results from bare module stage. [default: None] [required]
-l, --layer TEXT Layer of module, used for applying correct
QC criteria settings. Options: L0, L1, L2
(default is automatically determined from module SN)
-v, --verbosity [DEBUG|INFO|WARNING|ERROR]
Log level [options: DEBUG, INFO (default)
WARNING, ERROR] [default: LogLevel.info]
--site TEXT Your testing site. Required when submitting results. Please use same short-hand as on production DB, i.e. LBNL_PIXEL_MODULES for LBNL, IRFU for Paris-Saclay, ...
--vdepl FLOAT Depletion voltage [default: None]
ADC_CALIBRATION
This analysis script performs the ADC calibration. It produces several diagnostic plots and an output file with the ADC calibration slope and offset.
analysis-ADC-CALIBRATION --help
analysis-ADC-CALIBRATION --help
usage: analysis-ADC-CALIBRATION [-h] -i INPUT_MEAS [-o OUTPUT_DIR] [-q QC_CRITERIA] [-l LAYER] [--permodule]
[-f {root,numpy}] [-v VERBOSITY]
optional arguments:
-h, --help show this help message and exit
-i INPUT_MEAS, --input-meas INPUT_MEAS
path to the input measurement file or directory containing input measurement files.
-o OUTPUT_DIR, --output-dir OUTPUT_DIR
output directory
-q QC_CRITERIA, --qc-criteria QC_CRITERIA
path to json file with QC selection criteria (default: $(module-qc-analysis-tools --prefix)/analysis_cuts.json)
-l LAYER, --layer LAYER
Layer of module, used for applying correct QC criteria settings. Default setting uses information from production database. Options: L0, L1, L2.
--permodule Store results in one file per module (default: one file per chip)
-f {root,numpy}, --fit-method {root,numpy}
fitting method
-v VERBOSITY, --verbosity VERBOSITY
Log level [options: DEBUG, INFO (default), WARNING, ERROR]
ANALOG_READBACK
This analysis script performs the Analog Readback. It produces an output file with the calculated internal biases, temperature from the internal and external temperature sensor, and VDDA/VDDD vs Trim, including diagnostic plots with slope and offset.
analysis-ANALOG-READBACK --help
$ analysis-ANALOG-READBACK --help
usage: analysis-ANALOG-READBACK [-h] -i INPUT_MEAS [-o OUTPUT_DIR] [-q QC_CRITERIA] [-l LAYER] [--permodule]
[-f {root,numpy}] [-v VERBOSITY] [--verbose]
optional arguments:
-h, --help show this help message and exit
-i INPUT_MEAS, --input-meas INPUT_MEAS
path to the input measurement file or directory containing input measurement files.
-o OUTPUT_DIR, --output-dir OUTPUT_DIR
output directory
-q QC_CRITERIA, --qc-criteria QC_CRITERIA
path to json file with QC selection criteria (default: $(module-qc-analysis-tools --prefix)/analysis_cuts.json)
-l LAYER, --layer LAYER
Layer of module, used for applying correct QC criteria settings. Default setting uses information from production database. Options: L0, L1, L2.
--permodule Store results in one file per module (default: one file per chip)
-f {root,numpy}, --fit-method {root,numpy}
fitting method
-v VERBOSITY, --verbosity VERBOSITY
Log level [options: DEBUG, INFO (default), WARNING, ERROR]
--verbose verbose mode
SLDO
This script analyses the SLDO curve. It produces several diagnostic plots and an output file with several parameters extracted from the SLDO curves.
analysis-SLDO --help
$ analysis-SLDO --help
usage: analysis-SLDO [-h] -i INPUT_MEAS [-o OUTPUT_DIR] [-q QC_CRITERIA] [-l LAYER] [--permodule] [-n NCHIPS]
[-f {root,numpy}] [-v VERBOSITY] [--lp-enable]
optional arguments:
-h, --help show this help message and exit
-i INPUT_MEAS, --input-meas INPUT_MEAS
path to the input measurement file or directory containing input measurement files.
-o OUTPUT_DIR, --output-dir OUTPUT_DIR
output directory
-q QC_CRITERIA, --qc-criteria QC_CRITERIA
path to json file with QC selection criteria (default: $(module-qc-analysis-tools --prefix)/analysis_cuts.json)
-l LAYER, --layer LAYER
Layer of module, used for applying correct QC criteria settings. Default setting uses information from production database. Options: L0, L1, L2.
--permodule Store results in one file per module (default: one file per chip)
-n NCHIPS, --nChips NCHIPS
Number of chips powered in parallel (e.g. 4 for a quad module, 3 for a triplet, 1 for an
SCC.)
-f {root,numpy}, --fit-method {root,numpy}
fitting method
-v VERBOSITY, --verbosity VERBOSITY
Log level [options: DEBUG, INFO (default), WARNING, ERROR]
--lp-enable low power mode
VCAL_CALIBRATION
This analysis script performs the VCal calibration. It produces several diagnostic plots and an output file with the VCal calibration slope and offset.
analysis-VCAL-CALIBRATION --help
$ analysis-VCAL-CALIBRATION --help
usage: analysis-VCAL-CALIBRATION [-h] -i INPUT_MEAS [-o OUTPUT_DIR] [-q QC_CRITERIA] [-l LAYER] [--permodule]
[-f {root,numpy}] [-v VERBOSITY]
optional arguments:
-h, --help show this help message and exit
-i INPUT_MEAS, --input-meas INPUT_MEAS
path to the input measurement file or directory containing input measurement files.
-o OUTPUT_DIR, --output-dir OUTPUT_DIR
output directory
-q QC_CRITERIA, --qc-criteria QC_CRITERIA
path to json file with QC selection criteria (default: $(module-qc-analysis-tools --prefix)/analysis_cuts.json)
-l LAYER, --layer LAYER
Layer of module, used for applying correct QC criteria settings. Default setting uses information from production database. Options: L0, L1, L2.
--permodule Store results in one file per module (default: one file per chip)
-f {root,numpy}, --fit-method {root,numpy}
fitting method
-v VERBOSITY, --verbosity VERBOSITY
Log level [options: DEBUG, INFO (default), WARNING, ERROR]
INJECTION_CAPACITANCE
This analysis script performs the injection capacitance. It produces several diagnostic plots and an output file with the measured pixel injection capacitance.
analysis-INJECTION-CAPACITANCE --help
$ analysis-INJECTION-CAPACITANCE --help
usage: analysis-INJECTION-CAPACITANCE [-h] -i INPUT_MEAS [-o OUTPUT_DIR] [-q QC_CRITERIA] [-l LAYER] [--permodule]
[-v VERBOSITY]
optional arguments:
-h, --help show this help message and exit
-i INPUT_MEAS, --input-meas INPUT_MEAS
path to the input measurement file or directory containing input measurement files.
-o OUTPUT_DIR, --output-dir OUTPUT_DIR
output directory
-q QC_CRITERIA, --qc-criteria QC_CRITERIA
path to json file with QC selection criteria (default: $(module-qc-analysis-tools --prefix)/analysis_cuts.json)
-l LAYER, --layer LAYER
Layer of module, used for applying correct QC criteria settings. Default setting uses information from production database. Options: L0, L1, L2.
--permodule Store results in one file per module (default: one file per chip)
-v VERBOSITY, --verbosity VERBOSITY
Log level [options: DEBUG, INFO (default), WARNING, ERROR]
LP_MODE
This analysis script performs the Low Power mode analysis. It produces an output file with the measured internal voltages and currents in low power mode.
analysis-LP-MODE --help
$ analysis-LP-MODE --help
usage: analysis-LP-MODE [-h] -i INPUT_MEAS [-o OUTPUT_DIR] [-q QC_CRITERIA] [-l LAYER] [--permodule]
[-v VERBOSITY]
optional arguments:
-h, --help show this help message and exit
-i INPUT_MEAS, --input-meas INPUT_MEAS
path to the input measurement file or directory containing input measurement files.
-o OUTPUT_DIR, --output-dir OUTPUT_DIR
output directory
-q QC_CRITERIA, --qc-criteria QC_CRITERIA
path to json file with QC selection criteria (default: $(module-qc-analysis-tools --prefix)/analysis_cuts.json)
-l LAYER, --layer LAYER
Layer of module, used for applying correct QC criteria settings. Default setting uses information from production database. Options: L0,
L1, L$
--permodule Store results in one file per module (default: one file per chip)
-v VERBOSITY, --verbosity VERBOSITY
Log level [options: DEBUG, INFO (default), WARNING, ERROR]
OVERVOLTAGE_PROTECTION
This analysis script performs the Overvoltage protection analysis. It produces an output file with the measured internal voltages and currents in low power mode and when overvoltage protection mechanism is activated.
analysis-OVERVOLTAGE-PROTECTION --help
$ analysis-OVERVOLTAGE-PROTECTION --help
usage: analysis-OVERVOLTAGE-PROTECTION [-h] -i INPUT_MEAS [-o OUTPUT_DIR] [-q QC_CRITERIA] [-l LAYER] [--permodule]
[-v VERBOSITY]
optional arguments:
-h, --help show this help message and exit
-i INPUT_MEAS, --input-meas INPUT_MEAS
path to the input measurement file or directory containing input measurement files.
-o OUTPUT_DIR, --output-dir OUTPUT_DIR
output directory
-q QC_CRITERIA, --qc-criteria QC_CRITERIA
path to json file with QC selection criteria (default: $(module-qc-analysis-tools --prefix)/analysis_cuts.json)
-l LAYER, --layer LAYER
Layer of module, used for applying correct QC criteria settings. Default setting uses information from production database. Options: L0,
L1, L$
--permodule Store results in one file per module (default: one file per chip)
-v VERBOSITY, --verbosity VERBOSITY
Log level [options: DEBUG, INFO (default), WARNING, ERROR]
UNDERSHUNT_PROTECTION
This analysis script performs the Undershunt protection analysis. It produces an output file with the measured internal voltages and currents in when the undershunt protection mechanism is activated.
analysis-UNDERSHUNT-PROTECTION --help
$ analysis-UNDERSHUNT-PROTECTION --help
usage: analysis-UNDERSHUNT-PROTECTION [-h] -i INPUT_MEAS [-o OUTPUT_DIR] [-q QC_CRITERIA] [-l LAYER] [--permodule]
[-v VERBOSITY]
optional arguments:
-h, --help show this help message and exit
-i INPUT_MEAS, --input-meas INPUT_MEAS
path to the input measurement file or directory containing input measurement files.
-o OUTPUT_DIR, --output-dir OUTPUT_DIR
output directory
-q QC_CRITERIA, --qc-criteria QC_CRITERIA
path to json file with QC selection criteria (default: $(module-qc-analysis-tools
--prefix)/analysis_cuts.json)
-l LAYER, --layer LAYER
Layer of module, used for applying correct QC criteria settings. Default setting uses
information from production database. Options: L0,
L1, L$
--permodule Store results in one file per module (default: one file per chip)
-v VERBOSITY, --verbosity VERBOSITY
Log level [options: DEBUG, INFO (default), WARNING, ERROR]
DATA_TRANSMISSION
This analysis script performs the data transmission. It produces several diagnostic plots and an output file with the eye diagram width.
analysis-DATA-TRANSMISSION --help
analysis-DATA-TRANSMISSION --help
usage: analysis-DATA-TRANSMISSION [-h] -i INPUT_MEAS [-o OUTPUT_DIR] [-q QC_CRITERIA] [-l LAYER] [--permodule]
[-v VERBOSITY]
optional arguments:
-h, --help show this help message and exit
-i INPUT_MEAS, --input-meas INPUT_MEAS
path to the input measurement file or directory containing input measurement files.
-o OUTPUT_DIR, --output-dir OUTPUT_DIR
output directory
-q QC_CRITERIA, --qc-criteria QC_CRITERIA
path to json file with QC selection criteria (default: $(module-qc-analysis-tools --prefix)/analysis_cuts.json)
-l LAYER, --layer LAYER
Layer of module, used for applying correct QC criteria settings. Default setting uses information from production database. Options: L0, L1, L2.
--permodule Store results in one file per module (default: one file per chip)
-v VERBOSITY, --verbosity VERBOSITY
Log level [options: DEBUG, INFO (default), WARNING, ERROR]
MIN_HEALTH_TEST
This analysis script performs the minimum health analysis of YARR Scans. It
produces an output file with key parameters (number of dead/bad pixels, ...).
Note that the YARR scans to be used in the analysis should be identified with
analysis-load-yarr-scans, see Load Yarr Scans.
analysis-MIN_HEALTH_TEST --help
$ analysis-MIN-HEALTH-TEST -h
Usage: analysis-MIN-HEALTH-TEST [OPTIONS]
Options:
-i, --input-yarr-config PATH path to the json config file containing
paths to YARR scan outputs. Run analysis-
load-yarr-scans.py to generate. [default:
info.json]
-q, --qc-criteria PATH path to json file with QC selection criteria
[default: /home/eathompson/module-qc-
analysis-tools/src/module_qc_analysis_tools/
data/analysis_cuts.json]
-p, --pixel-failure-config PATH
path to json file with pixel failure
selection criteria [default:
/home/eathompson/module-qc-analysis-tools/sr
c/module_qc_analysis_tools/data/pixel_classi
fication.json]
-l, --layer TEXT Layer of module, used for applying correct
QC criteria settings. Options: L0, L1, L2
(default is automatically determined from module SN)
-o, --output-dir PATH output directory [default: outputs]
--permodule / --no-permodule Store results in one file per module
(default: one file per chip) [default: no-
permodule]
-v, --verbosity [DEBUG|INFO|WARNING|ERROR]
Log level [options: DEBUG, INFO (default)
WARNING, ERROR] [default: LogLevel.info]
TUNING
This analysis script analyzes the tuning performance from YARR scans. It
produces an output file with key parameters (threshold before/after tuning,
...). Note that the YARR scans to be used in the analysis should be identified
with analysis-load-yarr-scans, see Load Yarr Scans.
analysis-TUNING --help
$ analysis-TUNING -h
Usage: analysis-TUNING [OPTIONS]
Options:
-i, --input-yarr-config PATH path to the json config file containing
paths to YARR scan outputs. Run analysis-
load-yarr-scans.py to generate. [default:
info.json]
-q, --qc-criteria PATH path to json file with QC selection criteria
[default: /home/eathompson/module-qc-
analysis-tools/src/module_qc_analysis_tools/
data/analysis_cuts.json]
-p, --pixel-failure-config PATH
path to json file with pixel failure
selection criteria [default:
/home/eathompson/module-qc-analysis-tools/sr
c/module_qc_analysis_tools/data/pixel_classi
fication.json]
-l, --layer TEXT Layer of module, used for applying correct
QC criteria settings. Options: L0, L1, L2
(default is automatically determined from module SN)
-o, --output-dir PATH output directory [default: outputs]
--permodule / --no-permodule Store results in one file per module
(default: one file per chip) [default: no-
permodule]
-v, --verbosity [DEBUG|INFO|WARNING|ERROR]
Log level [options: DEBUG, INFO (default)
WARNING, ERROR] [default: LogLevel.info]
PIXEL_FAILURE_ANALYSIS
This analysis script classifies pixel failures and performs the pixel failure
analysis. It produces an output file with several key parameters (number of
pixels failing each category, total failing pixels, ...). Note that the YARR
scans to be used in the analysis should be identified with
analysis-load-yarr-scans, see Load Yarr Scans.
analysis-PIXEL-FAILURE-ANALYSIS --help
$ analysis-PIXEL-FAILURE-ANALYSIS -h
Usage: analysis-PIXEL-FAILURE-ANALYSIS [OPTIONS]
Options:
-i, --input-yarr-config PATH path to the json config file containing
paths to YARR scan outputs. Run analysis-
load-yarr-scans.py to generate. [default:
info.json]
-q, --qc-criteria PATH path to json file with QC selection criteria
[default: /home/eathompson/module-qc-
analysis-tools/src/module_qc_analysis_tools/
data/analysis_cuts.json]
-p, --pixel-failure-config PATH
path to json file with pixel failure
selection criteria [default:
/home/eathompson/module-qc-analysis-tools/sr
c/module_qc_analysis_tools/data/pixel_classi
fication.json]
-l, --layer TEXT Layer of module, used for applying correct
QC criteria settings. Options: L0, L1, L2
(default is automatically determined from module SN)
-o, --output-dir PATH output directory [default: outputs]
--permodule / --no-permodule Store results in one file per module
(default: one file per chip) [default: no-
permodule]
-v, --verbosity [DEBUG|INFO|WARNING|ERROR]
Log level [options: DEBUG, INFO (default)
WARNING, ERROR] [default: LogLevel.info]
Notes
Submit QC results
To submit the QC results, supply the --submit option to the analysis. You also need to supply the site where the testing took place, as written in production DB (i.e. LBNL_PIXEL_MODULES for LBNL, IRFU for Paris-Saclay, ...). This will generate a URL that is printed to the terminal and saved in "submit.txt" in the same folder as the analysis output. To submit the results, you need to copy and paste one URL for each chip / test into a browser. Once submitted, the results can be viewed here: https://docs.google.com/spreadsheets/d/1pw_07F94fg2GJQr8wlvhaRUV63uhsAuBt_S1FEFBzBU/view . While all submitted results will be recorded, only the latest results for each chip / test will be analyzed. If a mistake was realized in the submitted results, one can re-run the analysis and re-submit the results to overwrite the original results.
Example commands for a chip in a quad module
analysis-ADC-CALIBRATION -i ../module-qc-tools/emulator/outputs/Measurements/ADC_CALIBRATION/1000000001/
analysis-SLDO -i ../module-qc-tools/emulator/outputs/Measurements/SLDO/1000000001/
analysis-ANALOG-READBACK -i ../module-qc-tools/emulator/outputs/Measurements/ANALOG_READBACK/1000000001/
analysis-VCAL-CALIBRATION -i ../module-qc-tools/emulator/outputs/Measurements/VCAL_CALIBRATION/1000000001/
analysis-INJECTION-CAPACITANCE -i ../module-qc-tools/emulator/outputs/Measurements/INJECTION_CAPACITANCE/1000000001/
Update Chip Config
After each analysis, update the settings in the chip config by running:
analysis-update-chip-config -i <path to analysis output directory> -c <path to YARR config directory> -t <config type>
This script reads the analysis test type and update the corresponding parameters in the chip config.
analysis-update-chip-config --help
analysis-update-chip-config -h
-i, --input-dir Analysis output directory [default: None] [required]
-c, --config-dir Path to the module configuration directory to be modified [default: None] [required]
-t, --config-type The config type to be modified. E.g. L2_warm/L2_cold.
--override/--no-override Update chip configuration even if the chip failed QC [default: no-override]
--install-completion Install completion for the current shell.
--show-completion Show completion for the current shell, to copy it or customize the installation.
-h, --help Show this message and exit.
Load YARR Scans
Before running analysis of YARR scans (MIN_HEALTH_TEST, TUNING,
PIXEL_FAILURE_ANALYSIS), the YARR scans to be analyzed need to be identified.
This is done locally using the following script:
analysis-load-yarr-scans --help
$ analysis-load-yarr-scans -h
Options:
-o, --output-yarr PATH output directory to put
info_{TEST_NAME}.json which will be used as
input to YARR scan analysis [default: ./]
-m, --moduleSN TEXT Module serial number [required]
-v, --verbosity [DEBUG|INFO|WARNING|ERROR]
Log level [options: DEBUG, INFO (default)
WARNING, ERROR] [default: LogLevel.info]
-t, --test-name TEXT Test name (MIN_HEALTH_TEST, TUNING, or
PIXEL_FAILURE_ANALYSIS) [required]
-ds, --digital-scan PATH path to the digital scan output directory to
use in YARR analysis
-as, --analog-scan PATH path to the analog scan output directory to
use in YARR analysis
-hr, --threshold-scan-hr PATH path to the threshold scan (high-range)
output directory to use in YARR analysis
-hd, --threshold-scan-hd PATH path to the threshold scan (high-def) output
directory to use in YARR analysis
-ns, --noise-scan PATH path to the noise scan output directory to
use in YARR analysis
-zb, --zerobias PATH path to the threshold scan (high-def, zero-
bias) output directory to use in YARR
analysis
-db, --discbump PATH path to the disconnected bump scan output
directory to use in YARR analysis
Given a directory with YARR scans, the script will identify the latest YARR scans needed for all analyses. Alternatively, the paths to YARR scans for each type of scan can be supplied to the script.
For Developer
python version
A python version higher than 3.7 is needed for this repository. Check the local
python version with python -V.
If the local python version is lower, set up a virtual python environment following the instructions here.
versioning
In case you need to tag the version of the code, you need to have either hatch
or pipx installed.
- Activate python environment, e.g.
source venv/bin/activate. - Run
python -m pip install hatchorpython -m pip install pipx.
You can bump the version via:
pipx run hatch run tag x.y.z
# or
hatch run tag x.y.z
where x.y.z is the new version to use. This should be run from the default
branch (main / master) as this will create a commit and tag, and push for
you. So make sure you have the ability to push directly to the default branch.
pre-commit
Install pre-commit to avoid CI failure. Once pre-commit is installed, a git hook script will be run to identify simple issues before submission to code review.
Instruction for installing pre-commit in a python environment:
- Activate python environment, e.g.
source venv/bin/activate. - Run
python3 -m pip install pre-commit. - Run
pre-commit installto install the hooks in.pre-commit-config.yaml.
After installing pre-commit, .pre-commit-config.yaml will be run every time
git commit is done. Redo git add and git commit, if the pre-commit script
changes any files.
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