mograder 0.0.4

Semi-automated grading for Marimo notebooks

mograder

Semi-automated grading for Marimo notebooks.

mograder is the Marimo equivalent of nbgrader. Coding exercises support optional per-question marks via Grader (auto-scored pass/fail), while written analysis sections are hand-graded. Alternatively, without per-question marks, a single holistic mark (0-100) is assigned.

Try it

A live demo is available with three components:

1. Student Dashboard — WASM app hosted on GitHub Pages. Lists assignments, shows submission status, and links to Molab for editing.
2. Formgrader + Assignment Server — Combined ASGI app. The formgrader UI shows the full grading workflow (assignments, submissions, grading, students tabs) with pre-populated demo data. The same service also handles the assignment API at /assignments. Student self-registration is enabled with enrollment code demo.
3. Notebook Editor — Click "Edit in Molab" in the dashboard to open a notebook in Molab with full edit mode. Each notebook has a submit cell to send your work back to the assignment server.
4. GitHub Codespaces — Open the repo in a Codespace for a full development environment with uv, marimo, and the student dashboard pre-configured. Assignments are served from the demo server.

For students

See the Student Setup Guide for full instructions.

Quick start (macOS/Linux — just 2 commands):

curl -LsSf https://astral.sh/uv/install.sh | sh
uvx mograder student <CONFIG_URL>

Or open in GitHub Codespaces — one click, no install needed.

Directory convention

mograder follows nbgrader's terminology: source → release → submitted → autograded → feedback.

course/
  mograder.toml              ← optional config (dirs, moodle settings, etc.)
  gradebook.db               ← SQLite gradebook (created by autograde)
  source/
    assignment-name/
      assignment-name.py     ← source notebook (with solutions)
      data.csv               ← auxiliary files (copied to release)
  release/
    assignment-name/
      assignment-name.py     ← generated (solutions stripped)
      data.csv               ← copied from source
  submitted/
    assignment-name/
      student1.py            ← student submissions
  autograded/
    assignment-name/
      student1.py            ← output of mograder autograde
  feedback/
    assignment-name/
      student1.html          ← output of mograder feedback
  import/
    assignment-name.csv      ← Moodle offline grading worksheet (optional)

Workflow

1. mograder generate — source/*.py → release/*.py (strip solutions)
2. Students complete and submit .py files
3. mograder autograde — submitted/*.py → autograded/*.py
   • Integrity check against source notebook (detects tampered check/marks cells)
   • Runs each notebook via marimo export html
   • Parses check results from HTML
   • Injects verification summary + GTA feedback cells
   • Stores results in gradebook.db
4. GTAs grade — formgrader Grading tab or marimo edit
   • GTA sets manual mark and feedback per student
   • Grades saved to gradebook.db
5. mograder feedback — autograded/*.py → feedback/*.html
   • Injects mark + feedback callout into existing autograde HTML
   • Removes self-assessment scores cell
6. mograder moodle export — gradebook.db + worksheet.csv → export/
   • Merges grades into Moodle offline grading worksheets
   • Bundles HTML feedback into a Moodle-compatible ZIP
   • Auto-imports student names into gradebook
7. mograder moodle fetch / mograder moodle submit — students fetch assignments and submit work via Moodle API
8. mograder moodle fetch-submissions / mograder moodle upload-feedback — instructors bulk-download submissions and push grades/feedback via Moodle API
9. mograder moodle sync — syncs assignment metadata from Moodle into mograder.toml (instructor runs this, students get the config via URL or file)
10. mograder student — launches an interactive student dashboard (Marimo app) for downloading, validating, editing, and submitting assignments
11. mograder serve / mograder https * — lightweight HTTPS server + transport for assignment distribution without Moodle (HMAC token auth, atomic timestamped submissions)

Installation

Stable release:

pip install mograder # or: uv add mograder

Development version:

git clone https://github.com/jameskermode/mograder.git
cd mograder
uv venv && uv pip install -e ".[dev]"

Usage

Formgrader dashboard

Launch an interactive grading management dashboard:

mograder formgrader course/

This opens a marimo app with four tabs:

• Assignments — overview table with pipeline status and action buttons for generate, autograde, and export (feedback + Moodle merge). Source and release columns link to marimo edit.
• Submissions — per-student status for the selected assignment with marks breakdown, edit buttons, and auto/manual/total histograms.
• Grading — navigate between students with prev/next, set manual marks and feedback, auto-saved to the gradebook.
• Students — cross-assignment marks table with name lookup from the gradebook.

The formgrader reads mograder.toml from the course directory for directory names, Moodle settings, and gradebook path (see Configuration). Options: --port PORT to set the server port, --headless to suppress the browser.

Generate release notebooks

Strip solution blocks from source notebooks:

mograder generate source/hw1/hw1.py -o release/
mograder generate source/hw1/hw1.py --dry-run    # preview only
mograder generate source/hw1/hw1.py --validate   # check markers only

Source notebooks use markers to delimit solutions:

### BEGIN SOLUTION
x = 42
### END SOLUTION

Solution blocks are replaced with # YOUR CODE HERE / pass in the release version. Auxiliary files (data, helper modules) are automatically copied from the source directory. Notebooks import check() from mograder.runtime for formative feedback, or use Grader for per-question marks with reactive score tracking.

Autograde submissions

Run student notebooks and prepare grading copies with injected feedback cells:

mograder autograde submitted/hw1/*.py -o autograded/hw1/
mograder autograde submitted/hw1/*.py --source source/hw1/hw1.py --csv results.csv
mograder autograde submitted/hw1/*.py -j 8 --timeout 600

When --source is provided (or auto-discovered from a sibling source/ directory), mograder performs an integrity check — tampered check cells or marks definitions are reinjected from the source before execution. Default values for -j and --timeout can be set in mograder.toml (see Configuration).

Autograde directly from Moodle downloads

Instead of manually extracting submissions, you can pass the Moodle offline grading CSV and submission ZIP directly:

mograder autograde --moodle-csv grades.csv --moodle-zip submissions.zip --source source/hw1/hw1.py

This extracts submissions from the ZIP (mapping participant IDs to usernames via the CSV), then runs the normal autograde flow. The output directory and assignment name are inferred from the source notebook path.

Export feedback

Export graded notebooks to HTML and aggregate marks:

mograder feedback autograded/hw1/*.py -o feedback/hw1/
mograder feedback autograded/hw1/*.py --grades-csv grades.csv

Import student names

Import student names from a Moodle CSV into the gradebook (used for name display in the formgrader):

mograder import-students worksheet.csv

Sync to remote server

Sync autograded results to a remote server (e.g. a shared formgrader instance) via rsync + SSH:

mograder sync autograded/hw1/ --remote sciml --course-dir /home/svc_user/courses/es98e

This rsyncs .py and .html files to the remote autograded/ directory, then runs Gradebook.import_from_py() on the server via SSH to update the remote gradebook. If the remote uses a uv-managed venv, pass --venv-dir:

mograder sync autograded/hw1/ --remote sciml --course-dir /home/svc_user/courses/es98e --venv-dir '~/marimo-server'

All three flags can be set in mograder.toml (see Configuration) so you can just run mograder sync autograded/hw1/.

Autograded results can also be uploaded via the formgrader UI using the upload button in the Graded column of the Assignments table.

Moodle integration

The mograder moodle command group provides both offline CSV-based workflows and live Moodle API access.

Export grades (offline)

Merge grades into a Moodle offline grading worksheet and bundle feedback:

mograder moodle export "HW1" -o export/
mograder moodle export "HW1" --feedback-dir feedback/ -o export/
mograder moodle export "HW1" --worksheet custom.csv -o export/

The worksheet is auto-discovered at import/<assignment>.csv (matching formgrader convention). Grades are read from gradebook.db by default. The match column and name column can be configured in mograder.toml (see Configuration). Student names are auto-imported into the gradebook when the moodle command runs.

Fetch assignment (student)

Download assignment files from Moodle:

mograder moodle fetch "HW1"                     # download by name
mograder moodle fetch "HW1" -o ~/coursework/     # custom output directory
mograder moodle fetch --list                     # list available assignments

Downloads all attached files (.py notebooks and .zip archives with input data). ZIP files are automatically extracted. Assignment matching is flexible: exact name, numeric ID, or case-insensitive substring.

Submit assignment (student)

Upload a completed notebook to Moodle:

mograder moodle submit "HW1" hw1.py              # upload and finalize
mograder moodle submit "HW1" hw1.py --dry-run    # check without uploading
mograder moodle submit "HW1" hw1.py --no-finalize  # upload draft only

Only .py files are accepted. By default, submissions are finalized (visible to graders). Use --no-finalize to save as draft.

Fetch submissions (instructor)

Bulk-download all student submissions for an assignment:

mograder moodle fetch-submissions "HW1" -o submitted/hw1/

Downloads each student's latest .py submission, named by username.

Upload feedback (instructor)

Push grades and feedback to Moodle via the API:

mograder moodle upload-feedback "HW1"                # from gradebook.db
mograder moodle upload-feedback "HW1" --dry-run      # preview without pushing
mograder moodle upload-feedback "HW1" --grades-csv grades.csv  # from CSV

Sync assignment metadata (instructor)

Fetch assignment metadata from Moodle and write it to mograder.toml:

mograder moodle sync                          # sync all visible assignments
mograder moodle sync --include '^A[1-8]'      # only assignments matching regex

Only assignments visible to students are included (hidden assignments are excluded). Students receive this metadata via the config URL or file. Re-run after publishing or hiding assignments.

View feedback (student)

Check your submission status and view grade/feedback:

mograder moodle feedback "HW1"

Shows submission status, grade (if graded), and instructor feedback text.

All Moodle API commands accept --url and --token flags, or read from MOGRADER_MOODLE_URL / MOGRADER_MOODLE_TOKEN environment variables, or from the [moodle] section in mograder.toml.

HTTPS transport (Moodle-free alternative)

mograder includes a lightweight HTTP server and transport for distributing assignments without Moodle. This is useful for courses that don't use Moodle, for local testing, or as a simple course server on platforms like Molab.

Start an assignment server

mograder serve course/release/        # serve assignment files
mograder serve course/release/ -p 9000  # custom port

The server auto-discovers assignments from the directory structure. Each subdirectory with a files/ subfolder becomes an assignment. You can also provide a manual assignments.json manifest.

Authentication

Authentication is enabled by default. The server generates a secret (.mograder-secret) on first start and uses HMAC-SHA256 tokens in the format username:hmac_hex.

Student self-registration (recommended): Set an enrollment code so students can register themselves via the student dashboard or API:

mograder serve course/release/ --enrollment-code "my-course-phrase"
# or via environment variable:
MOGRADER_ENROLLMENT_CODE="my-course-phrase" mograder serve course/release/
# or from a file:
mograder serve course/release/ --enrollment-code-file enrollment.txt

Students enter their username + enrollment code in the dashboard to receive a personal token. The enrollment code can be shared in class or via LMS — it is separate from the HMAC secret.

Generate tokens manually (alternative): Use mograder token to generate tokens directly:

mograder token alice bob carol                      # reads .mograder-secret from CWD
mograder token --secret-file path/to/.mograder-secret alice bob
ssh server "cat /path/.mograder-secret" | mograder token --secret-stdin alice bob

Or from the serve command with a file of usernames (one per line):

mograder serve course/release/ --generate-tokens students.txt

Disable auth for local testing with --no-auth.

Token roles:

• Student tokens — can list/download assignments, submit own work, check own status
• Instructor token — full access: list submissions, download any submission, upload grades

Student commands

Students register via the student dashboard (enter username + enrollment code), or cache a token manually:

mograder https login --token <YOUR_TOKEN> --url https://server.example.com
mograder https fetch --list                              # list assignments
mograder https fetch "hw1" -o hw1/                       # download files
mograder https submit hw1.py -a "hw1"                    # submit work
mograder https feedback "hw1"                            # check status/grade

The URL and token can also be passed explicitly with --url and --token flags.

Instructor commands

mograder https fetch-submissions "hw1" --url https://server.example.com --token <INSTRUCTOR_TOKEN> -o submitted/hw1/
mograder https upload-grades "hw1" --url https://server.example.com --token <INSTRUCTOR_TOKEN> --grades-csv grades.csv

The URL can also be set in mograder.toml:

transport = "https"

[https]
url = "https://server.example.com"

Server directory structure

server_root/
  .mograder-secret                    # HMAC secret (auto-generated)
  assignments.json                    # optional manifest
  hw1/
    files/
      homework.py                     # assignment files
    grades.json                       # uploaded grades

submitted/                            # submission storage (configurable)
  hw1/
    alice_20260310T200800.py          # timestamped submissions
    alice.py -> alice_20260310T200800.py  # symlink to latest

Submissions are written atomically with timestamped filenames, preserving history across resubmissions. A symlink <user>.py always points to the latest version.

Student dashboard

Launch an interactive course browser as a local Marimo web app:

mograder student <CONFIG_URL>       # first-time setup from URL
mograder student                    # current directory (returning sessions)
mograder student ~/coursework/      # specific course directory
mograder student --port 8080        # custom port
mograder student --headless         # no browser auto-open

The dashboard provides:

• Login — for Moodle courses, paste your Moodle security token (from your Moodle Security Keys page). For HTTPS transport courses, register with your username and the enrollment code provided by your instructor (or paste a token directly). Tokens are cached at ~/.config/mograder/.
• Assignment table — lists all course assignments with due dates, status, check validation results, and action buttons.
• Download — downloads assignment .py files into per-assignment subdirectories.
• Edit — opens the notebook in a new marimo edit --sandbox session.
• Validate — runs the notebook and shows a summary of check results (e.g. "3/5 PASS") with an inline HTML report preview. Results are cached and marked stale when the notebook changes.
• Submit — uploads the .py file to Moodle and finalizes the submission.
• Status tracking — shows Downloaded, Submitted, or Modified for each assignment.
• Activity log — shows status messages for recent actions with dismiss button.

Configuration

Create mograder.toml in the course directory to customise settings:

config_url = "https://raw.githubusercontent.com/user/course/main/mograder.toml"
transport = "moodle"   # or "https" — selects the active transport for student/formgrader

# Transport-agnostic assignment list (written by `moodle sync` or `https sync`)
[[assignments]]
name = "HW1"
id = "10"
cmid = "42"
duedate = 1700000000
  [[assignments.files]]
  name = "hw1.py"
  url = "https://..."

[dirs]
source = "source"       # default directory names
import = "import"       # Moodle worksheets for export

[moodle]
url = "https://moodle.uni.ac.uk"  # Moodle site URL (for API commands)
course_id = 12345                  # Moodle course ID (for API commands)
csv = "moodle.csv"                 # default Moodle worksheet (for export)
match_column = "Username"
name_column = "Full name"

[https]
url = "http://localhost:8080"      # HTTPS transport server URL

[defaults]
jobs = 4
timeout = 300

[gradebook]
path = "gradebook.db"

[sync]
remote = "sciml"                                    # SSH host alias
remote_course_dir = "/home/svc_user/courses/es98e"  # course dir on remote
remote_venv_dir = "~/marimo-server"                 # uv venv dir on remote (optional)

Development

uv run pytest              # run tests
uv run ruff check src/     # lint

License

MIT