molecule-ai-workspace-runtime 0.1.127

Molecule AI workspace runtime — shared infrastructure for all agent adapters

molecule-ai-workspace-runtime

Shared workspace runtime for Molecule AI agent adapters. Installed by every workspace template image (workspace-template-claude-code, -langgraph, -hermes, etc.) to provide A2A delegation, heartbeat, memory, plugin loading, and skill management.

This package is published from the molecule-core monorepo workspace/ directory by the publish-runtime GitHub Actions workflow on every runtime-v* tag push. Do not edit this package directly — edit workspace/ in the monorepo.

External-runtime MCP server (molecule-mcp)

Operators running an agent outside the platform's container fleet (any runtime that supports MCP stdio — Claude Code, hermes, codex, etc.) can install this wheel and run the universal MCP server locally.

Requirements

• Python ≥3.11. The wheel sets requires-python = ">=3.11". On older interpreters pip install returns the cryptic Could not find a version that satisfies the requirement — that message is pip filtering this wheel out, NOT the package missing from PyPI. Upgrade with brew install python@3.12 / apt install python3.12 / pyenv install 3.12 first.
• pipx recommended over pip. pipx install puts molecule-mcp on PATH automatically and isolates the runtime's deps from your system Python. Plain pip install --user works but the binary lands in ~/.local/bin (Linux) or ~/Library/Python/3.X/bin (macOS) which is often not on PATH on a fresh shell — claude mcp add molecule -- molecule-mcp then fails with "command not found" at first use.

Install

# Recommended:
pipx install molecule-ai-workspace-runtime

# Alternative (manage PATH yourself):
pip install --user molecule-ai-workspace-runtime

Run

WORKSPACE_ID=<uuid> \
  PLATFORM_URL=https://<tenant>.staging.moleculesai.app \
  MOLECULE_WORKSPACE_TOKEN=<bearer> \
  molecule-mcp

That exposes the same 8 platform tools (delegate_task, list_peers, send_message_to_user, commit_memory, etc.) that container-bound runtimes already get via the workspace's auto-spawned MCP. Register the binary in your agent's MCP config (e.g. Claude Code's claude mcp add molecule -- molecule-mcp with the env above).

Keeping the token out of shell history

Inline MOLECULE_WORKSPACE_TOKEN=<bearer> ends up in ~/.zsh_history and (when registered via claude mcp add) plaintext in ~/.claude.json. To avoid that, write the token to a 0600 file and point MOLECULE_WORKSPACE_TOKEN_FILE at it:

umask 077
printf '%s' "<bearer>" > ~/.config/molecule/token
WORKSPACE_ID=<uuid> \
  PLATFORM_URL=https://<tenant>.staging.moleculesai.app \
  MOLECULE_WORKSPACE_TOKEN_FILE=$HOME/.config/molecule/token \
  molecule-mcp

Token resolution order: MOLECULE_WORKSPACE_TOKEN (inline env) → MOLECULE_WORKSPACE_TOKEN_FILE (path) → ${CONFIGS_DIR}/.auth_token (in-container default).

The token comes from the canvas → Tokens tab. Restarting an external workspace from the canvas no longer revokes the token (PR #2412), so operator tokens persist across status nudges.

Push vs poll delivery (Claude Code specifics)

By default the inbox runs in poll mode — every turn the agent calls wait_for_message, which blocks up to ~60s on /activity?since_id=…. Real-time push delivery is also supported, but on Claude Code it requires THREE conditions, ALL of which must hold:

1. The MCP server declares experimental.claude/channel — this wheel does (see _build_initialize_result). Nothing for you to do.
2. Claude Code installs the server as a marketplace plugin — a plain claude mcp add molecule -- molecule-mcp produces a non-plugin-sourced server, which Claude Code rejects with channel_enable requires a marketplace plugin. Until the official moleculesai/claude-code-plugin marketplace lands (tracking #2936), operators who want push must scaffold their own local marketplace under ~/.claude/marketplaces/molecule-local/ containing a marketplace.json + plugin.json that points at this wheel.
3. Claude Code is launched with the dev-channels flag — pass --dangerously-load-development-channels plugin:molecule@<marketplace> on the claude invocation. Without this flag the channel capability is silently ignored.

Symptom of any condition failing: messages arrive but only via the poll path (every ~1–60s), not real-time. There's currently no diagnostic surfaced — molecule-mcp doctor (tracking #2937) is planned.

If you don't need real-time push, the default poll path works universally with no extra setup; both modes converge on the same inbox_pop ack so messages never duplicate.

See docs/workspace-runtime-package.md for the publish flow and architecture.