moped
Installation
You can install moped using pip
pip install moped
However, you will still need to install NCBI Blast if you want to use the genome / proteome reconstruction methods
If you are using conda or mamba, you can install blast from bioconda:
conda install -c bioconda blast==2.12.0
mamba install -c bioconda blast==2.12.0
If you want to install BLAST yourself:
- download the latest blast version from NCBI
- Extract the downloaded folder to a path of your liking
- Add blast to your path e.g. by adding the following line to your .bashrc
export PATH="your_blast_directory/bin:$PATH"
Documentation
Check out our tutorial on readthedocs
Contributing
All contributions, bug reports, bug fixes, documentation improvements, enhancements and ideas are welcome. If you want to contribute code to the project, please consider our contribution guide
License
moped is licensed under GPL 3
Issues and support
If you experience issues using the software please contact us through our issues page.
2 maintainers
Metadata
2 maintainers
Release files for moped 1.13.94
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| moped-1.13.94.tar.gz | 46.4 kB | Without provenance | Details for moped-1.13.94.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| moped-1.13.94-py3-none-any.whl | Python 3 | none | any | Details for moped-1.13.94-py3-none-any.whl |
Total release size: 96.2 kB
Release files / moped-1.13.94.tar.gz
| Download URL | moped-1.13.94.tar.gz |
|---|---|
| Size | 46.4 kB |
| Tags | Source |
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No |
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poetry/1.2.2 CPython/3.10.6 Linux/5.15.154+
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Release files / moped-1.13.94-py3-none-any.whl
| Download URL | moped-1.13.94-py3-none-any.whl |
|---|---|
| Size | 49.8 kB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.2.2 CPython/3.10.6 Linux/5.15.154+
|
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