Multi-Omics Peptide Generator

PyPI - Version

moPepGen (multi-omics peptide generator) uses data from one or more omics experiments and calls variant peptides as custom databases for proteogenomic library search.

moPepGen takes genomic and transcriptomic variants such as single nucleotide variants (SNPs or SNVs), small insertions/deletions (indels), gene fusion, alternative splicing, RNA circularization and RNA editing events, and generates noncanonical peptides affected by the variants.

Installation

Install from PyPI

pip install mopepgen

Install directly from GitHub

pip install git+ssh://git@github.com/uclahs-cds/package-moPepGen.git

Documentation

See here

Citation

Zhu, C. et al. moPepGen: Rapid and Comprehensive Identification of Non-canonical Peptides. 2024.03.28.587261 Preprint at https://doi.org/10.1101/2024.03.28.587261 (2024).

Metadata

Release files for mopepgen 1.4.6

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for mopepgen 1.4.6
File	Size	Uploaded
mopepgen-1.4.6.tar.gz	214.7 kB	Jun 17, 2025	Details

Built distribution (wheel)

Table of built distributions (wheels) for mopepgen 1.4.6
File	Interpreter	ABI	Platform	Reset
mopepgen-1.4.6-py3-none-any.whl 276.2 kB Jun 17, 2025	Python 3	none	any	Details

Total release size: 491.0 kB

Release files / mopepgen-1.4.6.tar.gz

Download URL	mopepgen-1.4.6.tar.gz
Size	214.7 kB
Tags	Source
SHA-256 checksum How to use checksums	`71c72ad256357afc1015e57ab746b406c4630cf1944ffc46f88f3b10418b88e9`
BLAKE2b-256 checksum How to use checksums	`8457d2ed96adefbcc2f5d1b8b8907854907dda24bb822a3683e3b9d65e4f47bc`
Upload date	Jun 17, 2025
Uploaded using Trusted Publishing? What is trusted publishing?	Yes
Uploaded via	`twine/6.1.0 CPython/3.12.9`

Provenance

Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.

Identity

Publishing platform: GitHub Actions
Publishing repository: github.com/uclahs-cds/package-moPepGen
Publishing commit: github.com/uclahs-cds/package-moPepGen/tree/3912876d62babd8ee00d57965148d3d1c2557c97

Workflow

Publishing configuration: github.com/uclahs-cds/package-moPepGen/blob/3912876d62babd8ee00d57965148d3d1c2557c97/.github/workflows/pypi.yaml
Publishing logs: github.com/uclahs-cds/package-moPepGen/actions/runs/15715237250/attempts/1

Artifact

Subject: mopepgen-1.4.6.tar.gz
SHA-256 checksum: 71c72ad256357afc1015e57ab746b406c4630cf1944ffc46f88f3b10418b88e9 Verifying attestations

Release files / mopepgen-1.4.6-py3-none-any.whl

Download URL	mopepgen-1.4.6-py3-none-any.whl
Size	276.2 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`54637d533f456fca6f1f077be844bdf805aba98618da0b26346332a4af97f498`
BLAKE2b-256 checksum How to use checksums	`6986e79fb0b77c3f37e9fe51d0401b15ef239ea141511e8eb7dc6318a79cc034`
Upload date	Jun 17, 2025
Uploaded using Trusted Publishing? What is trusted publishing?	Yes
Uploaded via	`twine/6.1.0 CPython/3.12.9`

Provenance

Identity

Publishing platform: GitHub Actions
Publishing repository: github.com/uclahs-cds/package-moPepGen
Publishing commit: github.com/uclahs-cds/package-moPepGen/tree/3912876d62babd8ee00d57965148d3d1c2557c97

Workflow

Publishing configuration: github.com/uclahs-cds/package-moPepGen/blob/3912876d62babd8ee00d57965148d3d1c2557c97/.github/workflows/pypi.yaml
Publishing logs: github.com/uclahs-cds/package-moPepGen/actions/runs/15715237250/attempts/1

Artifact

Subject: mopepgen-1.4.6-py3-none-any.whl
SHA-256 checksum: 54637d533f456fca6f1f077be844bdf805aba98618da0b26346332a4af97f498 Verifying attestations