morphgen-rates 0.5.0

Compute bifurcation and annihilation rates from morphology data

morphgen-rates

Python package to compute bifurcation and annihilation rates from morphology-derived data.

Provenance

This package is based on code originally provided in the repository:

• https://github.com/FrancescoCavarretta/NeuronSynthesis

The original repository was developed for the following publication:

• Cavarretta F (2025) A mathematical model for data-driven synthesis of neuron morphologies based on random walks. Front. Appl. Math. Stat. 11:1632271. doi: 10.3389/fams.2025.1632271

Quick start

from morphgen_rates import compute_rates

# Replace `data` with your input object (events, traces, or morphology structures)
rates = compute_rates(data)

print(rates["bifurcation_rate"])
print(rates["annihilation_rate"])

License

GPL-3.0-or-later