MoSeq2-PCA
This is a library for computing PCA components and scores from extracted mouse movies. Use this to compute features for modeling.
Installation
pip install moseq2-pca
Python 3.10 or newer, on Linux. macOS and Windows support is being verified.
Most people install the whole pipeline in one step with pip install moseq2-app, which brings this package with it. See the installation
guide.
Documentation: MoSeq2 Wiki
You can find more information about MoSeq Pipeline, installation, step-by-step instructions, documentation for Command Line Interface(CLI), tutorials etc in MoSeq2 Wiki.
You can run moseq2-pca --version to check the current version and moseq2-pca --help to see all the commands.
Usage: moseq2-pca [OPTIONS] COMMAND [ARGS]...
Options:
--version Show the version and exit. [default: False]
--help Show this message and exit. [default: False]
Commands:
apply-pca Computes PCA Scores of extraction data given a...
clip-scores Clips specified number of frames from PCA scores at...
compute-changepoints Computes the Model-Free Syllable Changepoints based...
train-pca Trains PCA on all extracted results (h5 files) in...
Community Support and Contributing
- Please join
to post questions and interactive with MoSeq developers and users.
- If you encounter bugs, errors or issues, please submit a Bug report here. We encourage you to check out the troubleshooting and tips section and search your issues in the existing issues first.
- If you want to see certain features in MoSeq or you have new ideas, please submit a Feature request here.
- If you want to contribute to our codebases, please check out our Developer Guidelines.
- Please tell us what you think by filling out this user survey.
License
MoSeq is freely available for academic use under a license provided by Harvard University. Please refer to the license file for details. If you are interested in using MoSeq for commercial purposes please contact Bob Datta directly at srdatta@hms.harvard.edu, who will put you in touch with the appropriate people in the Harvard Technology Transfer office.
1 maintainer
Metadata
1 maintainer
Release files for moseq2-pca 1.4.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| moseq2_pca-1.4.3.tar.gz | 30.6 kB | With provenance | Details for moseq2_pca-1.4.3.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| moseq2_pca-1.4.3-py3-none-any.whl | Python 3 | none | any | Details for moseq2_pca-1.4.3-py3-none-any.whl |
Total release size: 64.8 kB
Release files / moseq2_pca-1.4.3.tar.gz
| Download URL | moseq2_pca-1.4.3.tar.gz |
|---|---|
| Size | 30.6 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
0acb6014ee4c4771f59077e984dda064dd09cac8df0291478cad3177aeb2df80
|
|
BLAKE2b-256 checksum How to use checksums |
608eae197e38d0e658e69d7d72b7411a9bd6d62c2d5fa3629482458fc809041a
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.16
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 28, 2026.
Transparency logRelease files / moseq2_pca-1.4.3-py3-none-any.whl
| Download URL | moseq2_pca-1.4.3-py3-none-any.whl |
|---|---|
| Size | 34.2 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
2f6de13e1944161b2394f5b497383f2749998e7c45fcd929bcb4081d6264e9d4
|
|
BLAKE2b-256 checksum How to use checksums |
d099d1e2e5b07f89ba859b81dd455275e30bc52a712ddc5236e3ee5921f00e78
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.16
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 28, 2026.
Transparency logSecurity for moseq2-pca 1.4.3
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
Full provenance
All 2 files in this release have been uploaded with provenance metadata.
Attestation for moseq2_pca-1.4.3.tar.gz
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 28, 2026.
Transparency logA note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.
